Rtraf-ps Pseudogene Detail

Summary

• Symbol
  Rtraf-ps
• Name
  RNA transcription, translation and transport factor, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3642446
  NCBI Gene: 545536
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:88483717-88484446 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 38.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642446	pseudogene	Chr3:88483544-88484510 (-)
129S1/SvImJ	ENSMUSG00200039805	pseudogene	Chr3:85338606-85339335 (-)
A/J	ENSMUSG00195053797	pseudogene	Chr3:85360458-85361187 (-)
AKR/J	ENSMUSG00220051732	pseudogene	Chr3:85315361-85316090 (-)
BALB/cJ	ENSMUSG00180049575	pseudogene	Chr3:85485108-85485837 (-)
C3H/HeJ	ENSMUSG00175050293	pseudogene	Chr3:85293512-85294241 (-)
C57BL/6NJ	ENSMUSG00215050886	pseudogene	Chr3:85726367-85727096 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012320	pseudogene	Chr8:50388293-50389095 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210047774	pseudogene	Chr3:85431196-85431925 (-)
DBA/2J	ENSMUSG00185052975	pseudogene	Chr3:85573655-85574384 (-)
FVB/NJ	ENSMUSG00205050398	pseudogene	Chr3:84355134-84355863 (-)
JF1/MsJ	ENSUMUG00000052417	pseudogene	Chr3:85094924-85095653 (-)
LP/J	ENSMUSG00230036558	pseudogene	Chr3:87559974-87560703 (-)
NOD/ShiLtJ	ENSMUSG00190050861	pseudogene	Chr3:85807297-85808026 (-)
NZO/HlLtJ	ENSMUSG00225007740	pseudogene	Chr3:90322491-90323220 (-)
PWK/PhJ	ENSLUMG00010052540	pseudogene	Chr3:85184335-85185064 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005050325	pseudogene	Chr3:85835818-85836547 (-)

Homology

• Gene Tree
  Rtraf-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rtraf-ps
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  19 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000074479 (Evidence)
• NCBI Gene
  545536

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074479	Ensembl Gene Model | MGI Sequence Detail	730	C57BL/6J
transcript	ENSMUST00000098952	Ensembl | MGI Sequence Detail	730	Not Applicable

Other
Accession IDs

MGI:6313712

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;