Gm10108 Pseudogene Detail

Summary

• Symbol
  Gm10108
• Name
  predicted pseudogene 10108

• Feature Type
  pseudogene
• IDs
  MGI:3642431
  NCBI Gene: 670717
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:13171415-13171733 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 3.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642431	pseudogene	Chr5:13170855-13171798 (-)
129S1/SvImJ	ENSMUSG00200003293	pseudogene	Chr5:9484565-9484883 (-)
A/J	ENSMUSG00195012723	pseudogene	Chr5:9048793-9049111 (-)
A/J	ENSMUSG00195038161	pseudogene	Chr16:12420094-12420408 (+)
AKR/J	ENSMUSG00220047643	pseudogene	Chr16:12732686-12733000 (+)
AKR/J	ENSMUSG00220002132	pseudogene	Chr5:9139468-9139786 (-)
BALB/cJ	ENSMUSG00180017986	pseudogene	Chr5:8842755-8843073 (-)
C3H/HeJ	ENSMUSG00175028741	pseudogene	Chr5:8720727-8721045 (-)
C3H/HeJ	ENSMUSG00175051742	pseudogene	Chr16:12806444-12806758 (+)
C57BL/6NJ	ENSMUSG00215029759	pseudogene	Chr5:9530792-9531110 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016154	pseudogene	Chr18:63086175-63086493 (+)
CAST/EiJ	ENSTCUG00005001859	pseudogene	Chr5:9056419-9056737 (-)
CAST/EiJ	ENSTCUG00005000187	pseudogene	Chr1:100949763-100950081 (-)
CBA/J	ENSMUSG00210002834	pseudogene	Chr5:9593820-9594138 (-)
CBA/J	ENSMUSG00210048747	pseudogene	Chr16:12822791-12823105 (+)
DBA/2J	ENSMUSG00185017270	pseudogene	Chr5:10191912-10192230 (-)
DBA/2J	ENSMUSG00185036570	pseudogene	Chr16:12768916-12769230 (+)
FVB/NJ	ENSMUSG00205049141	pseudogene	Chr16:12778286-12778600 (+)
FVB/NJ	ENSMUSG00205008918	pseudogene	Chr5:8774660-8774978 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230003619	pseudogene	Chr5:14162743-14163061 (-)
NOD/ShiLtJ	ENSMUSG00190051865	pseudogene	Chr16:12908893-12909207 (+)
NOD/ShiLtJ	ENSMUSG00190013370	pseudogene	Chr5:9085431-9085749 (-)
NZO/HlLtJ	ENSMUSG00225032571	pseudogene	Chr16:18592652-18592966 (+)
NZO/HlLtJ	ENSMUSG00225009172	pseudogene	Chr5:17851815-17852133 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005027053	pseudogene	Chr5:9192159-9192477 (-)

Homology

• Gene Tree
  Gm10108
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000062038 (Evidence)
• NCBI Gene
  670717

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062038	Ensembl Gene Model | MGI Sequence Detail	319	C57BL/6J
transcript	ENSMUST00000078246	Ensembl | MGI Sequence Detail	319	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;