Gm10780 Pseudogene Detail

Summary

• Symbol
  Gm10780
• Name
  predicted gene 10780

• Feature Type
  pseudogene
• IDs
  MGI:3642422
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:70596425-70596713 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 32.55 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  34

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642422	pseudogene	Chr3:70596425-70596713 (+)
129S1/SvImJ	ENSMUSG00200000657	pseudogene	Chr4:70200729-70201017 (-)
A/J	ENSMUSG00195003005	pseudogene	Chr4:6626692-6626980 (+)
AKR/J	ENSMUSG00220001444	pseudogene	Chr4:6403594-6403882 (+)
BALB/cJ	ENSMUSG00180000869	pseudogene	Chr4:69699230-69699518 (-)
C3H/HeJ	ENSMUSG00175006670	pseudogene	Chr8:23489378-23489666 (-)
C57BL/6NJ	ENSMUSG00215006926	pseudogene	Chr3:67814173-67814461 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013853	pseudogene	Chr13:19601841-19602129 (+)
CAST/EiJ	ENSTCUG00005021797	pseudogene	Chr6:16903362-16903422 (-)
CBA/J	ENSMUSG00210013252	pseudogene	Chr9:71384566-71384854 (-)
CBA/J	ENSMUSG00210015308	pseudogene	Chr8:97361728-97362016 (+)
CBA/J	ENSMUSG00210018244	pseudogene	Chr6:49904368-49904656 (-)
CBA/J	ENSMUSG00210000697	pseudogene	Chr4:70260032-70260320 (-)
CBA/J	ENSMUSG00210032439	pseudogene	Chr18:56998311-56998599 (+)
CBA/J	ENSMUSG00210007724	pseudogene	Chr14:89871251-89871539 (-)
CBA/J	ENSMUSG00210030872	pseudogene	Chr13:19433885-19434173 (+)
CBA/J	ENSMUSG00210038816	pseudogene	ChrX:4368568-4368856 (+)
CBA/J	ENSMUSG00210021274	pseudogene	Chr10:115351805-115352093 (+)
DBA/2J	ENSMUSG00185021606	pseudogene	Chr13:20128332-20128620 (+)
DBA/2J	ENSMUSG00185020385	pseudogene	Chr6:50484043-50484331 (-)
DBA/2J	ENSMUSG00185040687	pseudogene	Chr8:29224624-29224912 (-)
DBA/2J	ENSMUSG00185005983	pseudogene	Chr8:103469540-103469828 (+)
DBA/2J	ENSMUSG00185011284	pseudogene	Chr14:95055349-95055637 (-)
DBA/2J	ENSMUSG00185036996	pseudogene	ChrX:10960955-10961243 (+)
DBA/2J	ENSMUSG00185008310	pseudogene	Chr9:71406249-71406537 (-)
DBA/2J	ENSMUSG00185016185	pseudogene	Chr18:56897677-56897965 (+)
DBA/2J	ENSMUSG00185015913	pseudogene	Chr4:70797939-70798227 (-)
DBA/2J	ENSMUSG00185023144	pseudogene	Chr4:96282899-96283187 (-)
FVB/NJ	ENSMUSG00205017452	pseudogene	Chr8:96409634-96409922 (+)
JF1/MsJ	ENSUMUG00000014545	pseudogene	Chr8:105803997-105804285 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190003263	pseudogene	Chr3:67925169-67925457 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010021231	pseudogene	Chr14:8066985-8067273 (-)
SPRET/EiJ	ENSMSPG00010025302	pseudogene	Chr6:68188145-68188433 (-)
WSB/EiJ	ENSIUOG00005027679	pseudogene	Chr6:50159954-50160242 (-)

Homology

• Gene Tree
  Gm10780
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10780
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36

• Ensembl
  ENSMUSG00000074877 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074877	Ensembl Gene Model | MGI Sequence Detail	289	C57BL/6J
transcript	ENSMUST00000099459	Ensembl | MGI Sequence Detail	285	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;