Gm9944 Gene Detail

Summary

• Symbol
  Gm9944
• Name
  predicted gene 9944

• Feature Type
  lncRNA gene
• IDs
  MGI:3642412
  NCBI Gene: 791356
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:144177790-144180211 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 77.98 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642412	lncRNA gene	Chr4:144177790-144180211 (-)
129S1/SvImJ	ENSMUSG00200047911	lncRNA gene	Chr4:137289262-137291665 (-)
A/J	ENSMUSG00195035157	lncRNA gene	Chr4:138936269-138938690 (-)
AKR/J	ENSMUSG00220049504	lncRNA gene	Chr4:137649169-137651590 (-)
BALB/cJ	ENSMUSG00180046817	lncRNA gene	Chr4:136616963-136619384 (-)
C3H/HeJ	ENSMUSG00175041798	lncRNA gene	Chr4:137604046-137606467 (-)
C57BL/6NJ	ENSMUSG00215050716	lncRNA gene	Chr4:138975273-138977694 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026771	protein coding gene	Chr4:134226788-134227096 (-)
CAST/EiJ	ENSTCUG00005013804	lncRNA gene	Chr4:138740583-138743005 (-)
CBA/J	ENSMUSG00210029622	lncRNA gene	Chr4:137206679-137209100 (-)
DBA/2J	ENSMUSG00185051927	lncRNA gene	Chr4:138898072-138900475 (-)
FVB/NJ	ENSMUSG00205042227	lncRNA gene	Chr4:136452769-136455172 (-)
JF1/MsJ	ENSUMUG00000046350	lncRNA gene	Chr4:139309818-139312266 (-)
LP/J	ENSMUSG00230040551	lncRNA gene	Chr4:142436082-142438485 (-)
NOD/ShiLtJ	ENSMUSG00190034691	lncRNA gene	Chr4:136790551-136792954 (-)
NZO/HlLtJ	ENSMUSG00225010773	lncRNA gene	Chr4:148456185-148458606 (-)
PWK/PhJ	ENSLUMG00010047259	lncRNA gene	Chr4:136301368-136303771 (-)
SPRET/EiJ	ENSMSPG00010038186	lncRNA gene	Chr4:137955343-137957734 (-)
WSB/EiJ	ENSIUOG00005047871	lncRNA gene	Chr4:136523594-136525997 (-)

Homology

• Gene Tree
  Gm9944
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm9944
• Find Mice (IMSR)
  7 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000095213 (Evidence)
• NCBI Gene
  791356

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095213	Ensembl Gene Model | MGI Sequence Detail	2422	C57BL/6J
transcript	ENSMUST00000238297	Ensembl | MGI Sequence Detail	2422	Not Applicable
polypeptide	Q8C559	UniProt | EBI | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8