Gm9873 Gene Detail

Summary

• Symbol
  Gm9873
• Name
  predicted gene 9873

• Feature Type
  lncRNA gene
• IDs
  MGI:3642403
  NCBI Gene: 791354
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:168823083-168878546 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 89.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1910 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642403	lncRNA gene	Chr2:168823083-168878546 (+)
129S1/SvImJ	ENSMUSG00200040763	lncRNA gene	Chr2:165762767-165764127 (+)
A/J	ENSMUSG00195025708	lncRNA gene	Chr2:166106569-166107929 (+)
AKR/J	ENSMUSG00220034113	lncRNA gene	Chr2:165406818-165408178 (+)
BALB/cJ	ENSMUSG00180040740	lncRNA gene	Chr2:165554621-165555981 (+)
C3H/HeJ	ENSMUSG00175043054	lncRNA gene	Chr2:166326434-166327794 (+)
C57BL/6NJ	ENSMUSG00215033556	lncRNA gene	Chr2:165740591-165741951 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009167	lncRNA gene	Chr2:164639034-164640396 (+)
CBA/J	ENSMUSG00210041373	lncRNA gene	Chr2:166234825-166236185 (+)
DBA/2J	ENSMUSG00185026100	lncRNA gene	Chr2:165947904-165949264 (+)
FVB/NJ	ENSMUSG00205032857	lncRNA gene	Chr2:164981372-164982732 (+)
JF1/MsJ	ENSUMUG00000045292	lncRNA gene	Chr2:165608161-165609522 (+)
LP/J	ENSMUSG00230012869	lncRNA gene	Chr2:167523412-167524772 (+)
NOD/ShiLtJ	ENSMUSG00190043492	lncRNA gene	Chr2:165639765-165641125 (+)
NZO/HlLtJ	ENSMUSG00225003789	lncRNA gene	Chr2:175512663-175514023 (+)
PWK/PhJ	ENSLUMG00010039598	lncRNA gene	Chr2:165486943-165488526 (+)
SPRET/EiJ	ENSMSPG00010029132	lncRNA gene	Chr2:168246193-168247558 (+)
WSB/EiJ	ENSIUOG00005026300	lncRNA gene	Chr2:165348470-165349830 (+)

Homology

• Gene Tree
  Gm9873
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• UniProt
  1

• Ensembl
  ENSMUSG00000052368 (Evidence)
• NCBI Gene
  791354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052368	Ensembl Gene Model | MGI Sequence Detail	55464	C57BL/6J
transcript	ENSMUST00000254312	Ensembl | MGI Sequence Detail	2316	Not Applicable
polypeptide	Q8C507	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 2

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm9873:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr21893	Chr2:168847928-168847991 (+)	24,877 bp