Tmem147os Gene Detail

Summary

• Symbol
  Tmem147os
• Name
  transmembrane protein 147, opposite strand
• Synonyms
  C630016N16Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3642392
  NCBI Gene: 791088
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr7:30429054-30455559 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  623 from dbSNP Build 142
• Strain Annotations
  22

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642392	antisense lncRNA gene	Chr7:30428331-30455559 (+)
129S1/SvImJ	ENSMUSG00200025525	lncRNA gene	Chr7:20197878-20214133 (+)
A/J	ENSMUSG00195049349	lncRNA gene	Chr7:22874151-22890400 (+)
AKR/J	ENSMUSG00220053685	lncRNA gene	Chr7:21588093-21604241 (-)
BALB/cJ	ENSMUSG00180021873	lncRNA gene	Chr7:20933617-20949865 (+)
C3H/HeJ	ENSMUSG00175038150	protein coding gene	Chr7:22016165-22037484 (+)
C3H/HeJ	ENSMUSG00175044065	lncRNA gene	Chr7:22018043-22034385 (+)
C57BL/6NJ	ENSMUSG00215017418	protein coding gene	Chr7:20118306-20139633 (+)
C57BL/6NJ	ENSMUSG00215029499	lncRNA gene	Chr7:20120184-20136533 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004003	antisense lncRNA gene	Chr7:29951581-29967888 (+)
CAST/EiJ	ENSTCUG00005049174	lncRNA gene	Chr7:21910643-21926967 (+)
CBA/J	ENSMUSG00210026956	lncRNA gene	Chr7:21180663-21197009 (+)
CBA/J	ENSMUSG00210026515	protein coding gene	Chr7:21178785-21196976 (+)
DBA/2J	ENSMUSG00185054550	lncRNA gene	Chr7:24259627-24280230 (+)
FVB/NJ	ENSMUSG00205014922	protein coding gene	Chr7:20928131-20949452 (+)
FVB/NJ	ENSMUSG00205020879	lncRNA gene	Chr7:20930009-20946352 (+)
JF1/MsJ	ENSUMUG00000057886	lncRNA gene	Chr7:28705305-28721621 (+)
LP/J	ENSMUSG00230053962	lncRNA gene	Chr7:29429964-29446226 (+)
NOD/ShiLtJ	ENSMUSG00190008723	lncRNA gene	Chr7:20598509-20614755 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010024005	lncRNA gene	Chr7:20637398-20653808 (+)
SPRET/EiJ	ENSMSPG00010051426	lncRNA gene	Chr7:19997231-20012889 (+)
WSB/EiJ	ENSIUOG00005053802	lncRNA gene	Chr7:14882145-14898412 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  1 strains or lines available

Expression

• cDNA Data
  6

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• UniProt
  1

• Ensembl
  ENSMUSG00000097320 (Evidence), ENSMUSG00000109224 (Evidence)
• NCBI Gene
  791088

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000109224	Ensembl Gene Model | MGI Sequence Detail	26506	C57BL/6J
transcript	ENSMUST00000250169	Ensembl | MGI Sequence Detail	1130	Not Applicable
polypeptide	Q8C7L5	UniProt | EBI | MGI Sequence Detail	109	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81

TSS for Tmem147os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65802	Chr7:30428988-30429068 (+)	-26 bp
Tssr65803	Chr7:30429134-30429184 (+)	105 bp
Tssr65804	Chr7:30429220-30429231 (+)	172 bp
Tssr65805	Chr7:30430599-30430602 (+)	1,547 bp