Gm10739 Gene Detail

Summary

• Symbol
  Gm10739
• Name
  predicted gene 10739

• Feature Type
  lncRNA gene
• IDs
  MGI:3642385
  NCBI Gene: 100038639
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:105975055-106156291 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  6761 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642385	lncRNA gene	Chr13:105975055-106156291 (+)
129S1/SvImJ	ENSMUSG00200009228	lncRNA gene	Chr13:100395934-100577266 (+)
A/J	ENSMUSG00195013805	lncRNA gene	Chr13:100982165-101168345 (+)
AKR/J	ENSMUSG00220027427	lncRNA gene	Chr13:99408895-99595070 (+)
BALB/cJ	ENSMUSG00180031475	lncRNA gene	Chr13:101552814-101740986 (+)
C3H/HeJ	ENSMUSG00175028133	lncRNA gene	Chr13:101625136-101806458 (+)
C57BL/6NJ	ENSMUSG00215022720	lncRNA gene	Chr13:101622670-101803930 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011549	lncRNA gene	Chr13:100767770-100956181 (+)
CBA/J	ENSMUSG00210010647	lncRNA gene	Chr13:100946112-101127447 (+)
DBA/2J	ENSMUSG00185027541	lncRNA gene	Chr13:104708708-104896850 (+)
FVB/NJ	ENSMUSG00205038258	lncRNA gene	Chr13:100400867-100589042 (+)
JF1/MsJ	ENSUMUG00000014648	lncRNA gene	Chr13:104270291-104450920 (+)
LP/J	ENSMUSG00230008521	lncRNA gene	Chr13:114865605-115046918 (+)
NOD/ShiLtJ	ENSMUSG00190019628	lncRNA gene	Chr13:101289982-101476144 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010026268	lncRNA gene	Chr13:100305041-100485924 (+)
SPRET/EiJ	ENSMSPG00010017769	lncRNA gene	Chr13:101823849-102020454 (+)
WSB/EiJ	ENSIUOG00005037012	lncRNA gene	Chr13:100394758-100576098 (+)

Homology

• Gene Tree
  Gm10739
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• UniProt
  1

• Ensembl
  ENSMUSG00000114564 (Evidence)
• NCBI Gene
  100038639

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000114564	Ensembl Gene Model | MGI Sequence Detail	181237	C57BL/6J
transcript	ENSMUST00000223900	Ensembl | MGI Sequence Detail	1328	Not Applicable
polypeptide	Q3UUL2	UniProt | EBI | MGI Sequence Detail	39	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10739:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr120946	Chr13:106035449-106035465 (+)	60,402 bp