Gm10092 Pseudogene Detail

Summary

• Symbol
  Gm10092
• Name
  predicted gene 10092

• Feature Type
  pseudogene
• IDs
  MGI:3642362
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:35956309-35958101 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 25.43 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642362	pseudogene	Chr16:35956309-35958101 (+)
129S1/SvImJ	ENSMUSG00200030292	pseudogene	Chr16:32975668-32977486 (+)
A/J	ENSMUSG00195011455	pseudogene	Chr16:32527299-32529109 (+)
AKR/J	ENSMUSG00220029151	pseudogene	Chr16:32815101-32816924 (+)
BALB/cJ	ENSMUSG00180013307	pseudogene	Chr16:32742951-32744769 (+)
C3H/HeJ	ENSMUSG00175031690	pseudogene	Chr16:32879596-32881400 (+)
C57BL/6NJ	ENSMUSG00215024107	pseudogene	Chr16:32764084-32765878 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032194	pseudogene	Chr16:33142212-33144025 (+)
CBA/J	ENSMUSG00210028968	pseudogene	Chr16:32936716-32938504 (+)
DBA/2J	ENSMUSG00185024545	pseudogene	Chr16:32839697-32841504 (+)
FVB/NJ	ENSMUSG00205025790	pseudogene	Chr16:32875044-32876861 (+)
JF1/MsJ	ENSUMUG00000039396	pseudogene	Chr16:33044637-33046406 (+)
LP/J	ENSMUSG00230032689	pseudogene	Chr16:35495741-35497558 (+)
NOD/ShiLtJ	ENSMUSG00190024808	pseudogene	Chr16:33035866-33037678 (+)
NZO/HlLtJ	ENSMUSG00225040159	pseudogene	Chr16:38595088-38596901 (+)
PWK/PhJ	ENSLUMG00010029661	pseudogene	Chr16:32948802-32950581 (+)
SPRET/EiJ	ENSMSPG00010017869	pseudogene	Chr16:32876791-32878664 (+)
WSB/EiJ	ENSIUOG00005027226	pseudogene	Chr16:32996088-32997895 (+)

Homology

• Gene Tree
  Gm10092
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Genomic Mutations
  1 involving Gm10092
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000060956 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060956	Ensembl Gene Model | MGI Sequence Detail	1793	C57BL/6J
transcript	ENSMUST00000077110	Ensembl | MGI Sequence Detail	180	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:154850 Bilodeau M, et al., A retroviral strategy that efficiently creates chromosomal deletions in mammalian cells. Nat Methods. 2007 Mar;4(3):263-8
• Latest
  J:154051 Bilodeau M, et al., Analysis of blood stem cell activity and cystatin gene expression in a mouse model presenting a chromosomal deletion encompassing Csta and Stfa2l1. PLoS One. 2009;4(10):e7500