Gm10086 Pseudogene Detail

Summary

• Symbol
  Gm10086
• Name
  predicted pseudogene 10086

• Feature Type
  pseudogene
• IDs
  MGI:3642342
  NCBI Gene: 100042557
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:108665045-108665398 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 53.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642342	pseudogene	Chr5:108664975-108665436 (+)
129S1/SvImJ	ENSMUSG00200025044	pseudogene	Chr5:102414635-102414988 (+)
A/J	ENSMUSG00195040114	pseudogene	Chr5:101871491-101871844 (+)
AKR/J	ENSMUSG00220052080	pseudogene	Chr5:101422004-101422357 (+)
BALB/cJ	ENSMUSG00180047244	pseudogene	Chr5:102024309-102024662 (+)
C3H/HeJ	ENSMUSG00175048841	pseudogene	Chr5:104071370-104071723 (+)
C57BL/6NJ	ENSMUSG00215037084	pseudogene	Chr5:102068015-102068368 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044013	pseudogene	ChrX:53133571-53133924 (-)
CAST/EiJ	ENSTCUG00005015104	pseudogene	Chr18:18800582-18800935 (+)
CAST/EiJ	ENSTCUG00005035713	pseudogene	Chr5:101307145-101307498 (+)
CAST/EiJ	ENSTCUG00005024505	pseudogene	Chr8:98843221-98843574 (-)
CBA/J	ENSMUSG00210045094	pseudogene	Chr5:102828960-102829313 (+)
DBA/2J	ENSMUSG00185048117	pseudogene	Chr5:105728847-105729200 (+)
FVB/NJ	ENSMUSG00205044156	pseudogene	Chr5:101755589-101755942 (+)
JF1/MsJ	ENSUMUG00000018092	pseudogene	Chr5:108785940-108786293 (+)
JF1/MsJ	ENSUMUG00000044714	pseudogene	Chr11:47069532-47069885 (+)
LP/J	ENSMUSG00230032739	pseudogene	Chr5:109955667-109956020 (+)
NOD/ShiLtJ	ENSMUSG00190048588	pseudogene	Chr5:101723862-101724215 (+)
NZO/HlLtJ	ENSMUSG00225026531	pseudogene	Chr5:117577533-117577886 (+)
PWK/PhJ	ENSLUMG00010042878	pseudogene	Chr5:100772055-100772408 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005044539	pseudogene	Chr5:104451600-104451953 (+)

Homology

• Gene Tree
  Gm10086
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10086
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000060730 (Evidence)
• NCBI Gene
  100042557

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000060730	Ensembl Gene Model | MGI Sequence Detail	354	C57BL/6J
transcript	ENSMUST00000136334	Ensembl | MGI Sequence Detail	354	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17

TSS for Gm10086:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47841	Chr5:108664997-108665007 (+)	-43 bp