Gm10036 Pseudogene Detail

Summary

• Symbol
  Gm10036
• Name
  predicted gene 10036

• Feature Type
  pseudogene
• IDs
  MGI:3642334
  NCBI Gene: 100040551
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:15965851-15966384 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 9.77 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642334	pseudogene	Chr18:15965831-15966427 (+)
129S1/SvImJ	ENSMUSG00200019818	pseudogene	Chr18:12959031-12959564 (+)
A/J	ENSMUSG00195002302	pseudogene	Chr18:13105467-13106000 (+)
AKR/J	ENSMUSG00220012124	pseudogene	Chr18:13128981-13129514 (+)
AKR/J	ENSMUSG00220004170	pseudogene	Chr11:19890560-19891093 (-)
BALB/cJ	ENSMUSG00180004136	pseudogene	Chr18:13574290-13574823 (+)
C3H/HeJ	ENSMUSG00175004603	pseudogene	Chr18:13095430-13095963 (+)
C57BL/6NJ	ENSMUSG00215003746	pseudogene	Chr18:12795677-12796210 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0021671	protein coding gene	Chr17:43150200-43150786 (-)
CAST/EiJ	ENSTCUG00005015069	pseudogene	Chr18:12934467-12935000 (+)
CBA/J	ENSMUSG00210020532	pseudogene	Chr18:13122167-13122700 (+)
DBA/2J	ENSMUSG00185008439	pseudogene	Chr18:13108050-13108583 (+)
FVB/NJ	ENSMUSG00205005505	pseudogene	Chr11:19852170-19852703 (-)
FVB/NJ	ENSMUSG00205016940	pseudogene	Chr18:12822062-12822595 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230012599	pseudogene	Chr18:15167663-15168196 (+)
NOD/ShiLtJ	ENSMUSG00190017509	pseudogene	Chr18:12911645-12912178 (+)
NZO/HlLtJ	ENSMUSG00225028339	pseudogene	Chr18:15089544-15090077 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005020255	pseudogene	Chr18:12972134-12972667 (+)

Homology

• Gene Tree
  Gm10036
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000058064 (Evidence)
• NCBI Gene
  100040551

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058064	Ensembl Gene Model | MGI Sequence Detail	534	C57BL/6J
transcript	ENSMUST00000079733	Ensembl | MGI Sequence Detail	534	Not Applicable

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:354106 Zhang D, et al., Degradation of NLRP3 by p62-dependent-autophagy improves cognitive function in Alzheimer's disease by maintaining the phagocytic function of microglia. CNS Neurosci Ther. 2023 Oct;29(10):2826-2842

TSS for Gm10036:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150149	Chr18:15965829-15965831 (+)	-21 bp