About   Help   FAQ
Ptchd1as Gene Detail
Summary
  • Symbol
    Ptchd1as
  • Name
    Ptchd1 antisense RNA
  • Synonyms
    ENSMUSG00000055109, Gm15155
Location &
Maps
more
  • Sequence Map
    ChrX:154407532-154845068 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 72.38 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    9003 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3642241
 lncRNA gene ChrX:154407532-155128883 (+)
129S1/SvImJ ENSMUSG00200028574
 protein coding gene ChrX:131142373-131863510 (+)
A/J ENSMUSG00195035922
 protein coding gene ChrX:136234712-136962261 (+)
AKR/J ENSMUSG00220030316
 protein coding gene ChrX:128080943-128802150 (+)
BALB/cJ ENSMUSG00180036568
 protein coding gene ChrX:131604681-132323751 (+)
C3H/HeJ ENSMUSG00175025350
 protein coding gene ChrX:136181428-136902602 (+)
C57BL/6NJ ENSMUSG00215014661
 protein coding gene ChrX:131974810-132701345 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033521
 protein coding gene ChrX:144364071-144993245 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210035761
 protein coding gene ChrX:133486139-134207285 (+)
DBA/2J ENSMUSG00185043988
 protein coding gene ChrX:148451479-149172642 (+)
FVB/NJ ENSMUSG00205023260
 protein coding gene ChrX:132104802-132823128 (+)
JF1/MsJ ENSUMUG00000027156
 protein coding gene ChrX:168859222-169570514 (+)
LP/J ENSMUSG00230013418
 protein coding gene ChrX:155234936-155956066 (+)
NOD/ShiLtJ ENSMUSG00190031895
 protein coding gene ChrX:132622507-133341321 (+)
NZO/HlLtJ no annotation
PWK/PhJ ENSLUMG00010033311
 protein coding gene ChrX:129955615-130681043 (+)
SPRET/EiJ no annotation
WSB/EiJ ENSIUOG00005025450
 protein coding gene ChrX:132998255-133684104 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    3
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 102639025 NCBI Gene Model | MGI Sequence Detail 437537 C57BL/6J ±  kb
transcript AK028243 GenBank | ENA | DDBJ | MGI Sequence Detail 753 C57BL/6J  
polypeptide B1B034 UniProt | EBI | MGI Sequence Detail 138 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:7789073
References
more
  • Summaries
    All 15
    Phenotypes 4
  • Earliest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory