Gm9888 Gene Detail

Summary

• Symbol
  Gm9888
• Name
  predicted gene 9888

• Feature Type
  lncRNA gene
• IDs
  MGI:3642202
  NCBI Gene: 100038631
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:114609168-114611325 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 65.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642202	lncRNA gene	Chr9:114609168-114611325 (+)
129S1/SvImJ	ENSMUSG00200031737	lncRNA gene	Chr9:111711825-111713984 (+)
A/J	ENSMUSG00195045436	lncRNA gene	Chr9:110910556-110912710 (+)
AKR/J	ENSMUSG00220019658	lncRNA gene	Chr9:111374038-111376195 (+)
BALB/cJ	ENSMUSG00180035431	lncRNA gene	Chr9:111448270-111450424 (+)
C3H/HeJ	ENSMUSG00175020194	lncRNA gene	Chr9:111670240-111672394 (+)
C57BL/6NJ	ENSMUSG00215034576	lncRNA gene	Chr9:111554264-111556421 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004258	antisense lncRNA gene	Chr9:110243742-110245901 (+)
CAST/EiJ	ENSTCUG00005016856	lncRNA gene	Chr9:111331886-111334049 (+)
CBA/J	ENSMUSG00210040750	lncRNA gene	Chr9:111396665-111398822 (+)
DBA/2J	ENSMUSG00185017027	lncRNA gene	Chr9:111733403-111735561 (+)
FVB/NJ	ENSMUSG00205028985	lncRNA gene	Chr9:111570904-111573058 (+)
JF1/MsJ	ENSUMUG00000047629	lncRNA gene	Chr9:111566208-111568385 (+)
LP/J	ENSMUSG00230050395	lncRNA gene	Chr9:111840547-111842706 (+)
NOD/ShiLtJ	ENSMUSG00190051062	lncRNA gene	Chr9:111326538-111328695 (+)
NZO/HlLtJ	ENSMUSG00225024150	lncRNA gene	Chr9:112122099-112124258 (+)
PWK/PhJ	ENSLUMG00010039184	lncRNA gene	Chr9:111509679-111511836 (+)
SPRET/EiJ	ENSMSPG00010025982	lncRNA gene	Chr9:113169633-113171797 (+)
WSB/EiJ	ENSIUOG00005048329	lncRNA gene	Chr9:110788495-110790647 (+)

Homology

• Gene Tree
  Gm9888
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000052724 (Evidence)
• NCBI Gene
  100038631

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052724	Ensembl Gene Model | MGI Sequence Detail	2158	C57BL/6J
transcript	ENSMUST00000150678	Ensembl | MGI Sequence Detail	965	Not Applicable
polypeptide	Q8C9E7	UniProt | EBI | MGI Sequence Detail	177	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22

TSS for Gm9888:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87581	Chr9:114610154-114610193 (+)	1,006 bp