Gm15401 Gene Detail

Summary

• Symbol
  Gm15401
• Name
  predicted gene 15401
• Synonyms
  ENSMUSG00000072999

• Feature Type
  lncRNA gene
• IDs
  MGI:3642201
  NCBI Gene: 100038714
• Alliance
  genome feature page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr6:72606271-72614700 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 32.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  327 from dbSNP Build 142
• Strain Annotations
  26

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642201	lncRNA gene	Chr6:72606271-72631379 (+)
129S1/SvImJ	ENSMUSG00200013177	lncRNA gene	Chr6:69510361-69518790 (+)
129S1/SvImJ	ENSMUSG00200010945	protein coding gene	Chr6:69508622-69518679 (+)
A/J	ENSMUSG00195047462	lncRNA gene	Chr6:69272596-69281026 (+)
A/J	ENSMUSG00195039558	protein coding gene	Chr6:69270857-69280915 (+)
AKR/J	ENSMUSG00220046540	lncRNA gene	Chr6:68252842-68261301 (+)
BALB/cJ	ENSMUSG00180038349	lncRNA gene	Chr6:69627579-69636009 (+)
BALB/cJ	ENSMUSG00180034399	protein coding gene	Chr6:69625840-69635898 (+)
C3H/HeJ	ENSMUSG00175014556	lncRNA gene	Chr6:107784581-107793020 (-)
C57BL/6NJ	ENSMUSG00215042101	protein coding gene	Chr6:69598565-69608622 (+)
C57BL/6NJ	ENSMUSG00215043250	lncRNA gene	Chr6:69600304-69608733 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003876	antisense lncRNA gene	Chr6:69497109-69505529 (+)
CAST/EiJ	ENSTCUG00005036627	lncRNA gene	Chr6:69759248-69767743 (+)
CBA/J	ENSMUSG00210046266	lncRNA gene	Chr6:69457677-69466119 (+)
DBA/2J	ENSMUSG00185044632	lncRNA gene	Chr6:70017810-70026250 (+)
FVB/NJ	ENSMUSG00205034408	lncRNA gene	Chr6:68723092-68731521 (+)
FVB/NJ	ENSMUSG00205029613	protein coding gene	Chr6:68721353-68731410 (+)
JF1/MsJ	ENSUMUG00000043032	lncRNA gene	Chr6:69068920-69077428 (+)
LP/J	ENSMUSG00230006671	protein coding gene	Chr6:71103595-71113652 (+)
LP/J	ENSMUSG00230008083	lncRNA gene	Chr6:71105334-71113763 (+)
NOD/ShiLtJ	ENSMUSG00190040898	lncRNA gene	Chr6:68999147-69007613 (+)
NZO/HlLtJ	ENSMUSG00225006278	protein coding gene	Chr6:73077503-73087560 (+)
NZO/HlLtJ	ENSMUSG00225006941	lncRNA gene	Chr6:73079242-73087671 (+)
PWK/PhJ	ENSLUMG00010022074	lncRNA gene	Chr6:68478111-68486576 (+)
SPRET/EiJ	ENSMSPG00010026230	lncRNA gene	Chr6:70307010-70315292 (+)
WSB/EiJ	ENSIUOG00005027148	lncRNA gene	Chr6:70006948-70015392 (+)

Homology

• Gene Tree
  Gm15401
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  4
• Spontaneous
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm15401
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000072999 (Evidence)
• NCBI Gene
  100038714

Representative Sequences			Length	Strain/Species
genomic	100038714	NCBI Gene Model | MGI Sequence Detail	8430	C57BL/6J
transcript	NR_040421	RefSeq | MGI Sequence Detail	1464	C57BL/6
polypeptide	Q3V2H2	UniProt | EBI | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 20

  Phenotypes 10
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:386463 Rias E, et al., Protocol for isolation of total RNA from mouse whole cochlea using organic solvents. STAR Protoc. 2026 Mar 20;7(1):104376

TSS for Gm15401:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57153	Chr6:72604512-72604535 (+)	-1,747 bp
Tssr57154	Chr6:72606267-72606287 (+)	6 bp
Tssr57155	Chr6:72613209-72613220 (+)	6,944 bp
Tssr57156	Chr6:72613227-72613241 (+)	6,963 bp
Tssr57157	Chr6:72613251-72613264 (+)	6,987 bp
Tssr57158	Chr6:72613271-72613304 (+)	7,017 bp
Tssr57159	Chr6:72613310-72613315 (+)	7,042 bp
Tssr57160	Chr6:72613358-72613361 (+)	7,089 bp