Gm10045 Pseudogene Detail

Summary

• Symbol
  Gm10045
• Name
  predicted pseudogene 10045

• Feature Type
  pseudogene
• IDs
  MGI:3642098
  NCBI Gene: 100043348
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:29527112-29527594 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 15.21 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642098	pseudogene	Chr17:29527112-29527594 (+)
129S1/SvImJ	ENSMUSG00200054367	pseudogene	Chr17:25182191-25182673 (+)
A/J	ENSMUSG00195054617	pseudogene	Chr17:25996715-25997197 (+)
AKR/J	ENSMUSG00220053901	pseudogene	Chr17:25044371-25044853 (+)
BALB/cJ	ENSMUSG00180051813	pseudogene	Chr17:25484704-25485186 (+)
C3H/HeJ	ENSMUSG00175054061	pseudogene	Chr17:25032666-25033148 (+)
C57BL/6NJ	ENSMUSG00215054563	pseudogene	Chr17:25043470-25043952 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210051092	pseudogene	Chr17:24871105-24871587 (+)
DBA/2J	ENSMUSG00185055167	pseudogene	Chr17:27088319-27088801 (+)
FVB/NJ	ENSMUSG00205053600	pseudogene	Chr17:25356395-25356877 (+)
JF1/MsJ	ENSUMUG00000058042	pseudogene	Chr17:26554672-26555151 (+)
LP/J	ENSMUSG00230055262	pseudogene	Chr17:28607936-28608418 (+)
NOD/ShiLtJ	ENSMUSG00190054369	pseudogene	Chr17:24993222-24993704 (+)
NZO/HlLtJ	ENSMUSG00225055100	pseudogene	Chr17:30584950-30585432 (+)
PWK/PhJ	ENSLUMG00010053540	pseudogene	Chr17:24475042-24475521 (+)
SPRET/EiJ	ENSMSPG00010050599	pseudogene	Chr17:25762469-25762653 (+)
WSB/EiJ	ENSIUOG00005052404	pseudogene	Chr17:25752568-25753045 (+)

Homology

• Gene Tree
  Gm10045
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000094326 (Evidence)
• NCBI Gene
  100043348

Representative Sequences			Length	Strain/Species
genomic	100043348	NCBI Gene Model | MGI Sequence Detail	483	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10045:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143526	Chr17:29527068-29527071 (+)	-42 bp