Gm10552 Gene Detail

Summary

• Symbol
  Gm10552
• Name
  predicted gene 10552

• Feature Type
  lncRNA gene
• IDs
  MGI:3642083
  NCBI Gene: 100503502
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:85531100-85539617 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 43.60 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  60 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642083	lncRNA gene	Chr1:85531100-85539617 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220045049	lncRNA gene	Chr1:82441070-82448935 (-)
BALB/cJ	ENSMUSG00180016980	lncRNA gene	Chr1:82618725-82626532 (-)
C3H/HeJ	ENSMUSG00175001595	lncRNA gene	Chr1:82504388-82507773 (-)
C57BL/6NJ	ENSMUSG00215032520	lncRNA gene	Chr1:82420472-82428284 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002362	antisense lncRNA gene	Chr1:78069211-78069539 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185018307	lncRNA gene	Chr1:85306473-85314333 (-)
DBA/2J	ENSMUSG00185018184	lncRNA gene	Chr1:84180029-84187912 (-)
DBA/2J	ENSMUSG00185018103	lncRNA gene	Chr1:83706492-83714330 (+)
DBA/2J	ENSMUSG00185018226	lncRNA gene	Chr1:84649191-84657041 (-)
DBA/2J	ENSMUSG00185017386	lncRNA gene	Chr1:86816228-86824041 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000020426	lncRNA gene	Chr1:85590790-85598601 (-)
JF1/MsJ	ENSUMUG00000027165	lncRNA gene	Chr1:84661259-84665044 (-)
JF1/MsJ	ENSUMUG00000026616	lncRNA gene	Chr1:82658089-82665882 (+)
LP/J	ENSMUSG00230023214	lncRNA gene	Chr1:83644052-83651880 (+)
LP/J	ENSMUSG00230023238	lncRNA gene	Chr1:84285544-84293388 (+)
LP/J	ENSMUSG00230022083	lncRNA gene	Chr1:86094552-86102360 (-)
LP/J	ENSMUSG00230023336	lncRNA gene	Chr1:85250000-85257852 (-)
LP/J	ENSMUSG00230023259	lncRNA gene	Chr1:84586684-84594528 (-)
LP/J	ENSMUSG00230023229	lncRNA gene	Chr1:84117559-84125428 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225005292	lncRNA gene	Chr1:88487725-88495579 (-)
NZO/HlLtJ	ENSMUSG00225005233	lncRNA gene	Chr1:87361380-87369251 (-)
NZO/HlLtJ	ENSMUSG00225005216	lncRNA gene	Chr1:86887875-86895709 (+)
NZO/HlLtJ	ENSMUSG00225004636	lncRNA gene	Chr1:89997350-90005161 (-)
NZO/HlLtJ	ENSMUSG00225005251	lncRNA gene	Chr1:87830490-87838338 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm10552
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm10552
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000073628 (Evidence)
• NCBI Gene
  100503502

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073628	Ensembl Gene Model | MGI Sequence Detail	8518	C57BL/6J
transcript	ENSMUST00000370602	Ensembl | MGI Sequence Detail	1161	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 4

References

• Summaries
  All 10

  Developmental Gene Expression 1

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:374041 Verma A, et al., Parental noncoding RNA expression dynamics across sperm, oocyte, and zygote. NAR Genom Bioinform. 2025 Dec;7(4):lqaf136

TSS for Gm10552:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr12730	Chr1:85532228-85532260 (-)	7,373 bp