Gm10457 Gene Detail

Summary

• Symbol
  Gm10457
• Name
  predicted gene 10457

• Feature Type
  lncRNA gene
• IDs
  MGI:3642070
  NCBI Gene: 100038476
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:70959033-70961259 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 29.39 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642070	lncRNA gene	Chr12:70959033-70961259 (+)
129S1/SvImJ	ENSMUSG00200034077	lncRNA gene	Chr12:62881172-62883398 (+)
A/J	ENSMUSG00195014978	lncRNA gene	Chr12:65569591-65571814 (+)
AKR/J	ENSMUSG00220015289	lncRNA gene	Chr12:63378118-63380344 (+)
BALB/cJ	ENSMUSG00180035605	lncRNA gene	Chr12:64568645-64570870 (+)
C3H/HeJ	ENSMUSG00175029637	lncRNA gene	Chr12:67662974-67665198 (+)
C57BL/6NJ	ENSMUSG00215030676	lncRNA gene	Chr12:63949440-63951666 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037509	lncRNA gene	Chr12:63905341-63907525 (+)
CBA/J	ENSMUSG00210031288	lncRNA gene	Chr12:64132971-64135195 (+)
DBA/2J	ENSMUSG00185004838	lncRNA gene	Chr12:66032309-66034534 (+)
FVB/NJ	ENSMUSG00205038159	lncRNA gene	Chr12:63773426-63775648 (+)
JF1/MsJ	ENSUMUG00000032711	lncRNA gene	Chr12:70012185-70014421 (+)
LP/J	ENSMUSG00230022652	lncRNA gene	Chr12:73005634-73007860 (+)
NOD/ShiLtJ	ENSMUSG00190012476	lncRNA gene	Chr12:63194464-63196698 (+)
NZO/HlLtJ	ENSMUSG00225038317	lncRNA gene	Chr12:75074952-75077178 (+)
PWK/PhJ	ENSLUMG00010031807	lncRNA gene	Chr12:64069495-64071731 (+)
SPRET/EiJ	ENSMSPG00010029128	lncRNA gene	Chr12:65763416-65765643 (+)
WSB/EiJ	ENSIUOG00005013151	lncRNA gene	Chr12:63836024-63838247 (+)

Homology

• Gene Tree
  Gm10457
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm10457
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000113707 (Evidence)
• NCBI Gene
  100038476

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000113707	Ensembl Gene Model | MGI Sequence Detail	2227	C57BL/6J
transcript	ENSMUST00000222619	Ensembl | MGI Sequence Detail	1906	Not Applicable
polypeptide	Q3V0U8	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10457:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr113697	Chr12:70957414-70957415 (+)	-1,618 bp