Gm9937 Gene Detail

Summary

• Symbol
  Gm9937
• Name
  predicted gene 9937

• Feature Type
  lncRNA gene
• IDs
  MGI:3642051
  NCBI Gene: 791320
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:31092835-31094258 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642051	lncRNA gene	Chr17:31092835-31094258 (-)
129S1/SvImJ	ENSMUSG00200054118	lncRNA gene	Chr17:26779228-26780523 (-)
A/J	ENSMUSG00195054708	lncRNA gene	Chr17:27299985-27301280 (-)
A/J	ENSMUSG00195054662	lncRNA gene	Chr17:27710834-27712129 (-)
AKR/J	ENSMUSG00220053971	lncRNA gene	Chr17:26620536-26621831 (-)
BALB/cJ	ENSMUSG00180050147	lncRNA gene	Chr17:27054690-27055985 (-)
C3H/HeJ	ENSMUSG00175053888	lncRNA gene	Chr17:26620155-26621450 (-)
C57BL/6NJ	ENSMUSG00215054667	lncRNA gene	Chr17:26610003-26611295 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005050201	lncRNA gene	Chr17:27484510-27485804 (-)
CBA/J	ENSMUSG00210051439	lncRNA gene	Chr17:26446662-26447957 (-)
DBA/2J	ENSMUSG00185055741	lncRNA gene	Chr17:28654574-28655869 (-)
DBA/2J	ENSMUSG00185054516	lncRNA gene	Chr17:29065235-29066530 (-)
FVB/NJ	ENSMUSG00205053706	lncRNA gene	Chr17:26920907-26922199 (-)
JF1/MsJ	ENSUMUG00000058100	lncRNA gene	Chr17:28057455-28058742 (-)
JF1/MsJ	ENSUMUG00000057984	lncRNA gene	Chr17:28239129-28240416 (-)
LP/J	ENSMUSG00230055252	lncRNA gene	Chr17:30177802-30179097 (-)
NOD/ShiLtJ	ENSMUSG00190054330	lncRNA gene	Chr17:26559858-26561145 (-)
NZO/HlLtJ	ENSMUSG00225055092	lncRNA gene	Chr17:32153911-32155206 (-)
PWK/PhJ	ENSLUMG00010053483	lncRNA gene	Chr17:26045631-26046925 (-)
SPRET/EiJ	ENSMSPG00010050790	lncRNA gene	Chr17:27310508-27311812 (-)
WSB/EiJ	ENSIUOG00005052415	lncRNA gene	Chr17:27328218-27329513 (-)

Homology

• Gene Tree
  Gm9937
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• UniProt
  1

• Ensembl
  ENSMUSG00000118119 (Evidence)
• NCBI Gene
  791320

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118119	Ensembl Gene Model | MGI Sequence Detail	1424	C57BL/6J
transcript	ENSMUST00000235890	Ensembl | MGI Sequence Detail	1424	Not Applicable
polypeptide	Q8C5T1	UniProt | EBI | MGI Sequence Detail	131	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;

TSS for Gm9937:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147267	Chr17:31094005-31094010 (-)	250 bp