Gm10824 Gene Detail

Summary

• Symbol
  Gm10824
• Name
  predicted gene 10824

• Feature Type
  lncRNA gene
• IDs
  MGI:3642049
  NCBI Gene: 100038582
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:22689280-22697841 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 10.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  312 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642049	lncRNA gene	Chr10:22689280-22724573 (+)
129S1/SvImJ	ENSMUSG00200010471	lncRNA gene	Chr10:19525318-19559094 (+)
A/J	ENSMUSG00195006452	protein coding gene	Chr10:19843844-19851126 (+)
A/J	ENSMUSG00195007276	lncRNA gene	Chr10:19843218-19877018 (+)
AKR/J	ENSMUSG00220010424	lncRNA gene	Chr10:19538925-19572750 (+)
AKR/J	ENSMUSG00220009999	protein coding gene	Chr10:19539400-19546818 (+)
BALB/cJ	ENSMUSG00180014955	protein coding gene	Chr10:19966996-19974408 (+)
BALB/cJ	ENSMUSG00180015493	lncRNA gene	Chr10:19966501-20000304 (+)
C3H/HeJ	ENSMUSG00175019627	protein coding gene	Chr10:19654824-19662113 (+)
C3H/HeJ	ENSMUSG00175021222	lncRNA gene	Chr10:19654222-19688023 (+)
C57BL/6NJ	ENSMUSG00215004013	lncRNA gene	Chr10:19474065-19507803 (+)
C57BL/6NJ	ENSMUSG00215003338	protein coding gene	Chr10:19473146-19506728 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030164	lncRNA gene	Chr10:19288762-19322965 (+)
CBA/J	ENSMUSG00210015601	lncRNA gene	Chr10:19588511-19622246 (+)
CBA/J	ENSMUSG00210015516	protein coding gene	Chr10:19589002-19596409 (+)
DBA/2J	ENSMUSG00185006398	protein coding gene	Chr10:19764511-19771791 (+)
DBA/2J	ENSMUSG00185007324	lncRNA gene	Chr10:19763889-19797630 (+)
FVB/NJ	ENSMUSG00205019700	lncRNA gene	Chr10:19795111-19828911 (+)
FVB/NJ	ENSMUSG00205015722	protein coding gene	Chr10:19795713-19803008 (+)
JF1/MsJ	ENSUMUG00000014638	lncRNA gene	Chr10:19593490-19627694 (+)
LP/J	ENSMUSG00230011610	lncRNA gene	Chr10:21565567-21599341 (+)
NOD/ShiLtJ	ENSMUSG00190010219	protein coding gene	Chr10:19898569-19905988 (+)
NOD/ShiLtJ	ENSMUSG00190011518	lncRNA gene	Chr10:19898096-19931895 (+)
NZO/HlLtJ	ENSMUSG00225029572	protein coding gene	Chr10:25823512-25830802 (+)
NZO/HlLtJ	ENSMUSG00225030223	lncRNA gene	Chr10:25822908-25856667 (+)
PWK/PhJ	ENSLUMG00010015614	lncRNA gene	Chr10:19496014-19530291 (+)
SPRET/EiJ	ENSMSPG00010015101	lncRNA gene	Chr10:20136205-20170054 (+)
WSB/EiJ	ENSIUOG00005023352	lncRNA gene	Chr10:19171887-19205706 (+)

Homology

• Gene Tree
  Gm10824
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000112397 (Evidence)
• NCBI Gene
  100038582

Representative Sequences			Length	Strain/Species
genomic	100038582	NCBI Gene Model | MGI Sequence Detail	8562	C57BL/6J
transcript	AK033378	GenBank | ENA | DDBJ | MGI Sequence Detail	2199	C57BL/6J
polypeptide	Q3V3T4	UniProt | EBI | MGI Sequence Detail	118	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm10824:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92704	Chr10:22690866-22690886 (+)	1,596 bp
Tssr92705	Chr10:22693684-22693695 (+)	4,410 bp
Tssr92706	Chr10:22696167-22696178 (+)	6,893 bp