Gm9831 Gene Detail

Summary

• Symbol
  Gm9831
• Name
  predicted gene 9831
• Synonyms
  Gm40051, Gm42609

• Feature Type
  lncRNA gene
• IDs
  MGI:3642047
  NCBI Gene: 101056032
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:55284875-55310640 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  836 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642047	lncRNA gene	Chr3:55284875-55310643 (-)
129S1/SvImJ	ENSMUSG00200022959	protein coding gene	Chr3:52138793-52163413 (-)
129S1/SvImJ	ENSMUSG00200023728	lncRNA gene	Chr3:52137628-52163292 (-)
A/J	ENSMUSG00195031779	protein coding gene	Chr3:52075425-52100053 (-)
A/J	ENSMUSG00195032230	lncRNA gene	Chr3:52074260-52099932 (-)
AKR/J	ENSMUSG00220026853	protein coding gene	Chr3:52147257-52171903 (-)
AKR/J	ENSMUSG00220030602	lncRNA gene	Chr3:52146092-52171782 (-)
BALB/cJ	ENSMUSG00180028058	lncRNA gene	Chr3:52153568-52179232 (-)
BALB/cJ	ENSMUSG00180024426	protein coding gene	Chr3:52154733-52179353 (-)
C3H/HeJ	ENSMUSG00175008323	protein coding gene	Chr3:51996358-52020979 (-)
C3H/HeJ	ENSMUSG00175008829	lncRNA gene	Chr3:51995193-52020858 (-)
C57BL/6NJ	ENSMUSG00215005806	protein coding gene	Chr3:52433428-52458057 (-)
C57BL/6NJ	ENSMUSG00215009694	lncRNA gene	Chr3:52432263-52457936 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003365	antisense lncRNA gene	Chr3:48954945-48980625 (-)
CAST/EiJ	ENSTCUG00005010210	lncRNA gene	Chr3:51805369-51831035 (-)
CBA/J	ENSMUSG00210003248	protein coding gene	Chr3:52117772-52142374 (-)
CBA/J	ENSMUSG00210003847	lncRNA gene	Chr3:52116607-52142253 (-)
DBA/2J	ENSMUSG00185028122	lncRNA gene	Chr3:52325084-52350723 (-)
DBA/2J	ENSMUSG00185027874	protein coding gene	Chr3:52326250-52350844 (-)
FVB/NJ	ENSMUSG00205008760	protein coding gene	Chr3:51310347-51334971 (-)
FVB/NJ	ENSMUSG00205009490	lncRNA gene	Chr3:51309182-51334850 (-)
JF1/MsJ	ENSUMUG00000025921	lncRNA gene	Chr3:51780528-51806214 (-)
LP/J	ENSMUSG00230002968	protein coding gene	Chr3:54293370-54317987 (-)
LP/J	ENSMUSG00230005121	lncRNA gene	Chr3:54292205-54317866 (-)
NOD/ShiLtJ	ENSMUSG00190035469	lncRNA gene	Chr3:52493870-52519552 (-)
NOD/ShiLtJ	ENSMUSG00190026997	protein coding gene	Chr3:52495035-52519673 (-)
NZO/HlLtJ	ENSMUSG00225017913	lncRNA gene	Chr3:56904595-56930260 (-)
NZO/HlLtJ	ENSMUSG00225016612	protein coding gene	Chr3:56905760-56930381 (-)
PWK/PhJ	ENSLUMG00010009998	lncRNA gene	Chr3:51875879-51901576 (-)
SPRET/EiJ	ENSMSPG00010007580	lncRNA gene	Chr3:52642112-52667621 (-)
WSB/EiJ	ENSIUOG00005009487	lncRNA gene	Chr3:52284345-52310020 (-)

Homology

• Gene Tree
  Gm9831
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm9831
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  3
• UniProt
  1

• Ensembl
  ENSMUSG00000105975 (Evidence)
• NCBI Gene
  101056032

Representative Sequences			Length	Strain/Species
genomic	101056032	NCBI Gene Model | MGI Sequence Detail	25766	C57BL/6J
transcript	NR_165825	RefSeq | MGI Sequence Detail	3618	ZRU/MplStud
polypeptide	Q8CDQ7	UniProt | EBI | MGI Sequence Detail	368	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR032777 Domain of unknown function DUF4515

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5622936, MGI:5662746

References

• Summaries
  All 16

  Diseases 1

  Phenotypes 7
• Earliest
  J:64276 Lyon MF, et al., Dose-response curves for radiation-induced gene mutations in mouse oocytes and their interpretation. Mutat Res. 1979 Nov;63(1):161-73
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm9831:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33297	Chr3:55310632-55310646 (-)	1 bp
Tssr33296	Chr3:55310612-55310631 (-)	18 bp