K230015D01Rik Gene Detail

Summary

• Symbol
  K230015D01Rik
• Name
  RIKEN cDNA K230015D01 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3642019
  NCBI Gene: 100038474
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:105168903-105170420 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642019	lncRNA gene	Chr8:105168903-105170420 (+)
129S1/SvImJ	ENSMUSG00200015491	lncRNA gene	Chr8:99467084-99468600 (+)
129S1/SvImJ	ENSMUSG00200014378	protein coding gene	Chr8:99467276-99481286 (+)
A/J	ENSMUSG00195004035	lncRNA gene	Chr8:99750522-99752039 (+)
A/J	ENSMUSG00195003882	protein coding gene	Chr8:99750702-99764725 (+)
AKR/J	ENSMUSG00220011929	lncRNA gene	Chr8:99917891-99919407 (+)
AKR/J	ENSMUSG00220011179	protein coding gene	Chr8:99918071-99932094 (+)
BALB/cJ	ENSMUSG00180003891	protein coding gene	Chr8:99776150-99790172 (+)
BALB/cJ	ENSMUSG00180004167	lncRNA gene	Chr8:99775970-99777486 (+)
C3H/HeJ	ENSMUSG00175002731	protein coding gene	Chr8:99832909-99846931 (+)
C3H/HeJ	ENSMUSG00175002865	lncRNA gene	Chr8:99832729-99834245 (+)
C57BL/6NJ	ENSMUSG00215001412	lncRNA gene	Chr8:99447058-99448574 (+)
C57BL/6NJ	ENSMUSG00215001197	protein coding gene	Chr8:99447238-99461261 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023628	lncRNA gene	Chr8:99231004-99232566 (+)
CBA/J	ENSMUSG00210015329	lncRNA gene	Chr8:99761344-99762860 (+)
CBA/J	ENSMUSG00210015277	protein coding gene	Chr8:99761524-99775546 (+)
DBA/2J	ENSMUSG00185005731	lncRNA gene	Chr8:105869192-105870708 (+)
DBA/2J	ENSMUSG00185004812	protein coding gene	Chr8:105869372-105883394 (+)
FVB/NJ	ENSMUSG00205018778	lncRNA gene	Chr8:98794090-98795608 (+)
FVB/NJ	ENSMUSG00205011540	protein coding gene	Chr8:98794270-98808294 (+)
JF1/MsJ	ENSUMUG00000014856	lncRNA gene	Chr8:108202406-108203922 (+)
LP/J	ENSMUSG00230008708	lncRNA gene	Chr8:109549759-109551274 (+)
LP/J	ENSMUSG00230006185	protein coding gene	Chr8:109549939-109563960 (+)
NOD/ShiLtJ	ENSMUSG00190013455	lncRNA gene	Chr8:99899382-99900897 (+)
NOD/ShiLtJ	ENSMUSG00190012603	protein coding gene	Chr8:99899562-99913583 (+)
NZO/HlLtJ	ENSMUSG00225021044	protein coding gene	Chr8:112900420-112914441 (+)
NZO/HlLtJ	ENSMUSG00225023194	lncRNA gene	Chr8:112900240-112901755 (+)
PWK/PhJ	ENSLUMG00010004343	lncRNA gene	Chr8:99720466-99722027 (+)
SPRET/EiJ	ENSMSPG00010040425	lncRNA gene	Chr8:101838929-101840656 (+)
WSB/EiJ	ENSIUOG00005006158	lncRNA gene	Chr8:100575573-100577096 (+)

Homology

• Gene Tree
  K230015D01Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• UniProt
  1

• Ensembl
  ENSMUSG00000110630 (Evidence)
• NCBI Gene
  100038474

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000110630	Ensembl Gene Model | MGI Sequence Detail	1518	C57BL/6J
transcript	ENSMUST00000211969	Ensembl | MGI Sequence Detail	1516	Not Applicable
polypeptide	Q3TYK0	UniProt | EBI | MGI Sequence Detail	167	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;