Gm10433 MGI Mouse Gene Detail - MGI:3642010

Symbol

Gm10433
Name

predicted gene 10433

Feature Type

lncRNA gene
IDs

MGI:3642010
NCBI Gene: 100038378
Alliance

genome feature page
Transcription Start Sites

1 TSS

Sequence Map

Chr12:100154227-100159797 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 12, 50.43 cM
Mapping Data

1 experiment

SNPs within 2kb

239 from dbSNP Build 142
Strain Annotations

31

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642010	lncRNA gene	Chr12:100122780-100159810 (+)
129S1/SvImJ	ENSMUSG00200017729	protein coding gene	Chr12:91927333-91933685 (+)
129S1/SvImJ	ENSMUSG00200017975	lncRNA gene	Chr12:91927388-91932953 (+)
A/J	ENSMUSG00195021129	lncRNA gene	Chr12:94489235-94494805 (+)
A/J	ENSMUSG00195019838	protein coding gene	Chr12:94489180-94495537 (+)
AKR/J	ENSMUSG00220017609	protein coding gene	Chr12:92381439-92387804 (+)
AKR/J	ENSMUSG00220017745	lncRNA gene	Chr12:92381494-92387066 (+)
BALB/cJ	ENSMUSG00180037186	lncRNA gene	Chr12:93640412-93645984 (+)
BALB/cJ	ENSMUSG00180033959	protein coding gene	Chr12:93640304-93646718 (+)
C3H/HeJ	ENSMUSG00175029309	protein coding gene	Chr12:96302174-96308530 (+)
C3H/HeJ	ENSMUSG00175034845	lncRNA gene	Chr12:96302229-96307798 (+)
C57BL/6NJ	ENSMUSG00215040678	lncRNA gene	Chr12:92951652-92957224 (+)
C57BL/6NJ	ENSMUSG00215040638	protein coding gene	Chr12:92951544-92957958 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013372	unclassified non-coding RNA gene	Chr12:94806052-94811182 (+)
CAST/EiJ	ENSTCUG00005006152	lncRNA gene	Chr12:92599841-92605388 (+)
CBA/J	ENSMUSG00210014805	lncRNA gene	Chr12:93299319-93304891 (+)
CBA/J	ENSMUSG00210013753	protein coding gene	Chr12:93299264-93305631 (+)
DBA/2J	ENSMUSG00185044144	protein coding gene	Chr12:95088686-95095058 (+)
DBA/2J	ENSMUSG00185047778	lncRNA gene	Chr12:95088741-95094314 (+)
FVB/NJ	ENSMUSG00205018804	lncRNA gene	Chr12:92464075-92469645 (+)
FVB/NJ	ENSMUSG00205012624	protein coding gene	Chr12:92464020-92470375 (+)
JF1/MsJ	ENSUMUG00000026275	lncRNA gene	Chr12:99816521-99822108 (+)
LP/J	ENSMUSG00230004655	lncRNA gene	Chr12:102192518-102198083 (+)
LP/J	ENSMUSG00230004123	protein coding gene	Chr12:102192463-102198815 (+)
NOD/ShiLtJ	ENSMUSG00190005280	lncRNA gene	Chr12:92842213-92847785 (-)
NOD/ShiLtJ	ENSMUSG00190005179	protein coding gene	Chr12:92841475-92847893 (-)
NZO/HlLtJ	ENSMUSG00225033591	lncRNA gene	Chr12:103909420-103914989 (+)
NZO/HlLtJ	ENSMUSG00225033361	protein coding gene	Chr12:103909365-103915721 (+)
PWK/PhJ	ENSLUMG00010014057	lncRNA gene	Chr12:93302797-93308386 (+)
SPRET/EiJ	ENSMSPG00010019647	lncRNA gene	Chr12:95736866-95742409 (+)
WSB/EiJ	ENSIUOG00005002172	lncRNA gene	Chr12:92287812-92293380 (+)

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Gene Tree

Gm10433

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Phenotype Summary

5 phenotype references

All Mutations and Alleles

5
Chemically induced (other)

1
Gene trapped

4
Genomic Mutations

1 involving Gm10433
Find Mice (IMSR)

3 strains or lines available

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

597
cDNA Data

3

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

51
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000072884 (Evidence)
NCBI Gene

100038378

			Length	Strain/Species	Flank
genomic	100038378	NCBI Gene Model \| MGI Sequence Detail	5571	C57BL/6J	± kb
transcript	NR_045282	RefSeq \| MGI Sequence Detail	1982	C57BL/6
polypeptide	Q3UR77	UniProt \| EBI \| MGI Sequence Detail	88	Not Applicable

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UniProt

1 Sequence

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All nucleic 3

cDNA 3

Summaries

All 14

Phenotypes 5
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
Latest

J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm10433:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114692	Chr12:100153935-100153977 (+)	-271 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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