Gm10608 Pseudogene Detail

Summary

• Symbol
  Gm10608
• Name
  predicted gene 10608
• Synonyms
  EG546165

• Feature Type
  pseudogene
• IDs
  MGI:3642009
  NCBI Gene: 546165
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:118991798-118992473 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 71.33 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642009	pseudogene	Chr9:118991720-118993155 (+)
129S1/SvImJ	ENSMUSG00200032845	pseudogene	Chr9:116110651-116111326 (+)
A/J	ENSMUSG00195029223	pseudogene	Chr9:115292154-115292829 (+)
AKR/J	ENSMUSG00220020151	pseudogene	Chr9:115750247-115750922 (+)
BALB/cJ	ENSMUSG00180030986	pseudogene	Chr9:115829513-115830188 (+)
C3H/HeJ	ENSMUSG00175019592	pseudogene	Chr9:116072824-116073499 (+)
C57BL/6NJ	ENSMUSG00215037403	pseudogene	Chr9:115943890-115944565 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017624	pseudogene	Chr9:115704369-115705044 (+)
CBA/J	ENSMUSG00210044091	pseudogene	Chr9:115789110-115789785 (+)
DBA/2J	ENSMUSG00185017818	pseudogene	Chr9:116123326-116124001 (+)
FVB/NJ	ENSMUSG00205031537	pseudogene	Chr9:115961007-115961682 (+)
JF1/MsJ	ENSUMUG00000050544	pseudogene	Chr9:115982188-115982863 (+)
LP/J	ENSMUSG00230038554	pseudogene	Chr9:116239024-116239699 (+)
NOD/ShiLtJ	ENSMUSG00190015167	pseudogene	Chr9:115722414-115723089 (+)
NZO/HlLtJ	ENSMUSG00225024175	pseudogene	Chr9:116505646-116506321 (+)
PWK/PhJ	ENSLUMG00010039003	pseudogene	Chr9:115883963-115884638 (+)
SPRET/EiJ	ENSMSPG00010025568	pseudogene	Chr9:117584637-117585312 (+)
WSB/EiJ	ENSIUOG00005023016	pseudogene	Chr9:115175740-115176415 (+)

Homology

• Gene Tree
  Gm10608
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  11 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm10608
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  27 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000111197 (Evidence)
• NCBI Gene
  546165

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000111197	Ensembl Gene Model | MGI Sequence Detail	676	C57BL/6J
transcript	ENSMUST00000213924	Ensembl | MGI Sequence Detail	676	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

Other
Accession IDs

MGI:3648969

References

• Summaries
  All 17

  Phenotypes 11
• Earliest
  J:12215 Chubb C, Oligotriche and quaking gene mutations. Phenotypic effects on mouse spermatogenesis and testicular steroidogenesis. J Androl. 1992 Jul-Aug;13(4):312-7
• Latest
  J:187815 Runkel F, et al., Alopecia in a viable phospholipase C delta 1 and phospholipase C delta 3 double mutant. PLoS One. 2012;7(6):e39203

TSS for Gm10608:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr87670	Chr9:118991688-118991711 (+)	-98 bp