Gm10847 Gene Detail

Summary

• Symbol
  Gm10847
• Name
  predicted gene 10847

• Feature Type
  lncRNA gene
• IDs
  MGI:3642004
  NCBI Gene: 100038618
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr14:75159565-75164044 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 39.45 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  279 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3642004	lncRNA gene	Chr14:75159466-75170573 (+)
129S1/SvImJ	ENSMUSG00200011354	lncRNA gene	Chr14:63585417-63592158 (+)
A/J	ENSMUSG00195004275	lncRNA gene	Chr14:63740451-63747134 (+)
AKR/J	ENSMUSG00220007452	lncRNA gene	Chr14:63128958-63135594 (+)
BALB/cJ	ENSMUSG00180022603	lncRNA gene	Chr14:63332503-63339199 (+)
C3H/HeJ	ENSMUSG00175031411	lncRNA gene	Chr14:65149967-65156603 (+)
C57BL/6NJ	ENSMUSG00215023494	lncRNA gene	Chr14:63327765-63334458 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032003	lncRNA gene	Chr14:64974677-64981398 (+)
CBA/J	ENSMUSG00210010317	lncRNA gene	Chr14:63764906-63771532 (+)
DBA/2J	ENSMUSG00185024482	lncRNA gene	Chr14:68909446-68916085 (+)
FVB/NJ	ENSMUSG00205025004	lncRNA gene	Chr14:63156055-63162740 (+)
JF1/MsJ	ENSUMUG00000045797	lncRNA gene	Chr14:80061675-80068717 (+)
LP/J	ENSMUSG00230017958	lncRNA gene	Chr14:80935487-80942222 (+)
NOD/ShiLtJ	ENSMUSG00190011378	lncRNA gene	Chr14:63522485-63529500 (+)
NZO/HlLtJ	ENSMUSG00225040638	lncRNA gene	Chr14:71251362-71257925 (+)
PWK/PhJ	ENSLUMG00010011399	lncRNA gene	Chr14:62925593-62933207 (+)
SPRET/EiJ	ENSMSPG00010028342	lncRNA gene	Chr14:66561473-66568074 (+)
WSB/EiJ	ENSIUOG00005023460	lncRNA gene	Chr14:62910947-62917587 (+)

Homology

• Gene Tree
  Gm10847
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000115002 (Evidence)
• NCBI Gene
  100038618

Representative Sequences			Length	Strain/Species
genomic	100038618	NCBI Gene Model | MGI Sequence Detail	4480	C57BL/6J
transcript	NR_166820	RefSeq | MGI Sequence Detail	378	C57BL/6
polypeptide	Q3US27	UniProt | EBI | MGI Sequence Detail	111	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:57747 MGI Genome Annotation Group and UniGene Staff, MGI-UniGene Interconnection Effort. Database Download. 2015;

TSS for Gm10847:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr126597	Chr14:75159545-75159555 (+)	-15 bp
Tssr126598	Chr14:75159559-75159576 (+)	3 bp
Tssr126599	Chr14:75159580-75159588 (+)	19 bp
Tssr126600	Chr14:75159596-75159601 (+)	34 bp