Ppp1r36dn Gene Detail

Summary

• Symbol
  Ppp1r36dn
• Name
  Ppp1r36 downstream neighbor
• Synonyms
  Gm10451

• Feature Type
  lncRNA gene
• IDs
  MGI:3641898
  NCBI Gene: 100041694
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:76491271-76495472 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 33.73 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  326 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641898	lncRNA gene	Chr12:76490941-76573553 (+)
129S1/SvImJ	ENSMUSG00200033207	lncRNA gene	Chr12:68436935-68443774 (+)
A/J	ENSMUSG00195035499	lncRNA gene	Chr12:71148849-71155688 (+)
AKR/J	ENSMUSG00220015714	lncRNA gene	Chr12:68907481-68914322 (+)
BALB/cJ	ENSMUSG00180034543	lncRNA gene	Chr12:70109810-70116649 (+)
C3H/HeJ	ENSMUSG00175043629	lncRNA gene	Chr12:73276595-73283434 (+)
C57BL/6NJ	ENSMUSG00215029100	lncRNA gene	Chr12:69487953-69494792 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017867	protein coding gene	Chr12:70991674-70998832 (+)
CAST/EiJ	ENSTCUG00005036367	lncRNA gene	Chr12:69463519-69477516 (+)
CBA/J	ENSMUSG00210030958	lncRNA gene	Chr12:69695981-69702819 (+)
DBA/2J	ENSMUSG00185043132	lncRNA gene	Chr12:71560506-71567347 (+)
FVB/NJ	ENSMUSG00205036388	lncRNA gene	Chr12:69323531-69330412 (+)
JF1/MsJ	ENSUMUG00000024015	lncRNA gene	Chr12:75596904-75603624 (+)
LP/J	ENSMUSG00230021937	lncRNA gene	Chr12:78560649-78567488 (+)
NOD/ShiLtJ	ENSMUSG00190013424	lncRNA gene	Chr12:68747391-68754230 (+)
NZO/HlLtJ	ENSMUSG00225038715	lncRNA gene	Chr12:80622558-80629397 (+)
PWK/PhJ	ENSLUMG00010034028	lncRNA gene	Chr12:69626397-69633237 (+)
SPRET/EiJ	ENSMSPG00010020537	lncRNA gene	Chr12:71396701-71403507 (+)
WSB/EiJ	ENSIUOG00005012888	lncRNA gene	Chr12:69388466-69395307 (+)

Homology

• Gene Tree
  Ppp1r36dn
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  1 strains or lines available

Mice homozygous for a null allele are viable with no obvious defects.

Expression

• Assay Results
  597
• cDNA Data
  9

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073000 (Evidence)
• NCBI Gene
  100041694

Representative Sequences			Length	Strain/Species
genomic	100041694	NCBI Gene Model | MGI Sequence Detail	4202	C57BL/6J
transcript	NR_028520	RefSeq | MGI Sequence Detail	893	C57BL/6
polypeptide	Q3UW49	UniProt | EBI | MGI Sequence Detail	101	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:7425248

References

• Summaries
  All 13

  Phenotypes 1
• Earliest
  J:330639 Han X, et al., Mouse knockout models reveal largely dispensable but context-dependent functions of lncRNAs during development. J Mol Cell Biol. 2018 Apr 1;10(2):175-178
• Latest
  J:388268 Huang Y, et al., lncRNA Gm10451 regulates PTIP to facilitate iPSCs-derived beta-like cell differentiation by targeting miR-338-3p as a ceRNA. Biomaterials. 2019 Sep;216:119266