Gm10069 Gene Detail

Summary

• Symbol
  Gm10069
• Name
  predicted gene 10069

• Feature Type
  lncRNA gene
• IDs
  MGI:3641875
  NCBI Gene: 791299
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:128415720-128480244 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 63.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1961 from dbSNP Build 142
• Strain Annotations
  27

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641875	lncRNA gene	Chr6:128414857-128485652 (+)
129S1/SvImJ	ENSMUSG00200047256	lncRNA gene	Chr6:125491898-125556334 (+)
A/J	ENSMUSG00195030126	protein coding gene	Chr6:124911663-124946330 (+)
A/J	ENSMUSG00195031643	lncRNA gene	Chr6:124911603-124975987 (+)
AKR/J	ENSMUSG00220034950	protein coding gene	Chr6:123773312-123807968 (+)
AKR/J	ENSMUSG00220042309	lncRNA gene	Chr6:123773252-123837628 (+)
BALB/cJ	ENSMUSG00180034205	protein coding gene	Chr6:125248679-125283473 (+)
BALB/cJ	ENSMUSG00180039874	lncRNA gene	Chr6:125248619-125312997 (+)
C3H/HeJ	ENSMUSG00175043677	lncRNA gene	Chr6:124917582-124981952 (+)
C3H/HeJ	ENSMUSG00175036640	protein coding gene	Chr6:124917642-124952298 (+)
C57BL/6NJ	ENSMUSG00215029261	lncRNA gene	Chr6:125245940-125310493 (+)
C57BL/6NJ	ENSMUSG00215020240	protein coding gene	Chr6:125246000-125280643 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003942	antisense lncRNA gene	Chr6:124190361-124259912 (+)
CAST/EiJ	ENSTCUG00005041595	lncRNA gene	Chr6:125099205-125162908 (+)
CBA/J	ENSMUSG00210016284	protein coding gene	Chr6:124948817-124983481 (+)
CBA/J	ENSMUSG00210017085	lncRNA gene	Chr6:124948757-125013128 (+)
DBA/2J	ENSMUSG00185042249	protein coding gene	Chr6:125649534-125684312 (+)
DBA/2J	ENSMUSG00185043973	lncRNA gene	Chr6:125649474-125713835 (+)
FVB/NJ	ENSMUSG00205036267	lncRNA gene	Chr6:124521273-124585618 (+)
JF1/MsJ	ENSUMUG00000042416	lncRNA gene	Chr6:124068973-124132222 (+)
LP/J	ENSMUSG00230044702	lncRNA gene	Chr6:126846152-126910517 (+)
LP/J	ENSMUSG00230042757	protein coding gene	Chr6:126846212-126880867 (+)
NOD/ShiLtJ	ENSMUSG00190040151	lncRNA gene	Chr6:124637945-124702554 (+)
NZO/HlLtJ	ENSMUSG00225016672	lncRNA gene	Chr6:128876716-128941048 (+)
PWK/PhJ	ENSLUMG00010042309	lncRNA gene	Chr6:123315900-123384822 (+)
SPRET/EiJ	ENSMSPG00010041931	lncRNA gene	Chr6:126177416-126241072 (+)
WSB/EiJ	ENSIUOG00005045857	lncRNA gene	Chr6:125349298-125413784 (+)

Homology

• Gene Tree
  Gm10069
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  32
• Gene trapped
  32
• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  89 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  93
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000059659 (Evidence)
• NCBI Gene
  791299

Representative Sequences			Length	Strain/Species
genomic	791299	NCBI Gene Model | MGI Sequence Detail	64525	C57BL/6J
transcript	NR_028592	RefSeq | MGI Sequence Detail	3922	C57BL/6
polypeptide	Q8BG77	UniProt | EBI | MGI Sequence Detail	132	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:255070 Watanabe T, et al., Retrotransposons and pseudogenes regulate mRNAs and lncRNAs via the piRNA pathway in the germline. Genome Res. 2015 Mar;25(3):368-80

TSS for Gm10069:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr59065	Chr6:128415751-128415805 (+)	58 bp
Tssr59066	Chr6:128462556-128462568 (+)	46,842 bp
Tssr59067	Chr6:128464385-128464400 (+)	48,673 bp