Gm9958 Gene Detail

Summary

• Symbol
  Gm9958
• Name
  predicted gene 9958

• Feature Type
  lncRNA gene
• IDs
  MGI:3641866
  NCBI Gene: 791294
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr5:90514856-90516347 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 44.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641866	lncRNA gene	Chr5:90514479-90516352 (+)
129S1/SvImJ	ENSMUSG00200010341	lncRNA gene	Chr5:86244540-86246424 (+)
129S1/SvImJ	ENSMUSG00200008821	protein coding gene	Chr5:86244538-86246487 (+)
A/J	ENSMUSG00195025067	protein coding gene	Chr5:85417236-85419174 (+)
A/J	ENSMUSG00195026927	lncRNA gene	Chr5:85417238-85419111 (+)
AKR/J	ENSMUSG00220012316	lncRNA gene	Chr5:85562937-85564810 (+)
AKR/J	ENSMUSG00220011154	protein coding gene	Chr5:85562935-85564873 (+)
BALB/cJ	ENSMUSG00180025992	lncRNA gene	Chr5:85264453-85266336 (+)
BALB/cJ	ENSMUSG00180022283	protein coding gene	Chr5:85264451-85266399 (+)
C3H/HeJ	ENSMUSG00175046033	lncRNA gene	Chr5:87359486-87361368 (+)
C3H/HeJ	ENSMUSG00175041176	protein coding gene	Chr5:87359484-87361431 (+)
C57BL/6NJ	ENSMUSG00215034209	lncRNA gene	Chr5:86110208-86112081 (+)
C57BL/6NJ	ENSMUSG00215015744	protein coding gene	Chr5:86110206-86112144 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0027386	protein coding gene	Chr5:83554775-83556061 (+)
CAST/EiJ	ENSTCUG00005038322	lncRNA gene	Chr5:85030593-85032464 (+)
CBA/J	ENSMUSG00210006720	lncRNA gene	Chr5:86159290-86161172 (+)
CBA/J	ENSMUSG00210005078	protein coding gene	Chr5:86159288-86161235 (+)
DBA/2J	ENSMUSG00185040029	protein coding gene	Chr5:88073478-88075425 (+)
DBA/2J	ENSMUSG00185041745	lncRNA gene	Chr5:88073480-88075362 (+)
FVB/NJ	ENSMUSG00205028489	protein coding gene	Chr5:84963296-84965243 (+)
FVB/NJ	ENSMUSG00205033195	lncRNA gene	Chr5:84963298-84965180 (+)
JF1/MsJ	ENSUMUG00000043337	lncRNA gene	Chr5:92372520-92374398 (+)
LP/J	ENSMUSG00230024099	protein coding gene	Chr5:92770916-92772864 (+)
LP/J	ENSMUSG00230028187	lncRNA gene	Chr5:92770918-92772801 (+)
NOD/ShiLtJ	ENSMUSG00190042220	lncRNA gene	Chr5:85041764-85043646 (+)
NZO/HlLtJ	ENSMUSG00225009666	lncRNA gene	Chr5:97918458-97920339 (+)
NZO/HlLtJ	ENSMUSG00225008005	protein coding gene	Chr5:97918456-97920402 (+)
PWK/PhJ	ENSLUMG00010030443	lncRNA gene	Chr5:85038741-85040614 (+)
SPRET/EiJ	ENSMSPG00010036516	lncRNA gene	Chr5:87441125-87443015 (+)
WSB/EiJ	ENSIUOG00005029765	lncRNA gene	Chr5:88051133-88053011 (+)

Homology

• Gene Tree
  Gm9958
  

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  42
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000054945 (Evidence)
• NCBI Gene
  791294

Representative Sequences			Length	Strain/Species
genomic	791294	NCBI Gene Model | MGI Sequence Detail	1492	C57BL/6J
transcript	NR_045618	RefSeq | MGI Sequence Detail	1506	C57BL/6
polypeptide	Q8C9U4	UniProt | EBI | MGI Sequence Detail	106	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 3

References

• Summaries
  All 12
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm9958:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47073	Chr5:90513242-90513278 (+)	-1,596 bp
Tssr47074	Chr5:90514475-90514530 (+)	-353 bp
Tssr47075	Chr5:90515430-90515448 (+)	583 bp