Mir223hg Gene Detail

Summary

• Symbol
  Mir223hg
• Name
  Mir223 host gene
• Synonyms
  ENSMUSG00000065522, F630028O10Rik, Gm14924, lnc15847

• Feature Type
  lncRNA gene
• IDs
  MGI:3641813
  NCBI Gene: 100038363
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:95283532-95287248 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 42.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641813	lncRNA gene	ChrX:95283390-95287267 (+)
129S1/SvImJ	ENSMUSG00200038820	lncRNA gene	ChrX:76977472-76981241 (+)
129S1/SvImJ	ENSMUSG00200037473	protein coding gene	ChrX:76977474-76980465 (+)
A/J	ENSMUSG00195032660	lncRNA gene	ChrX:80774385-80778154 (+)
A/J	ENSMUSG00195031068	protein coding gene	ChrX:80774387-80777378 (+)
AKR/J	ENSMUSG00220027600	protein coding gene	ChrX:75514560-75517551 (+)
AKR/J	ENSMUSG00220030781	lncRNA gene	ChrX:75514558-75518327 (+)
BALB/cJ	ENSMUSG00180023390	lncRNA gene	ChrX:77438003-77441772 (+)
BALB/cJ	ENSMUSG00180019445	protein coding gene	ChrX:77438005-77440996 (+)
C3H/HeJ	ENSMUSG00175018441	protein coding gene	ChrX:81132754-81135745 (+)
C3H/HeJ	ENSMUSG00175019523	lncRNA gene	ChrX:81132752-81136521 (+)
C57BL/6NJ	ENSMUSG00215021975	lncRNA gene	ChrX:77653955-77657724 (+)
C57BL/6NJ	ENSMUSG00215014158	protein coding gene	ChrX:77653957-77656948 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004288	antisense lncRNA gene	ChrX:90781153-90784981 (+)
CAST/EiJ	ENSTCUG00005029411	lncRNA gene	ChrX:78644656-78648442 (+)
CBA/J	ENSMUSG00210032927	protein coding gene	ChrX:77880585-77883576 (+)
CBA/J	ENSMUSG00210036016	lncRNA gene	ChrX:77880583-77884352 (+)
DBA/2J	ENSMUSG00185032900	lncRNA gene	ChrX:90346200-90349969 (+)
DBA/2J	ENSMUSG00185031347	protein coding gene	ChrX:90346202-90349193 (+)
FVB/NJ	ENSMUSG00205027101	lncRNA gene	ChrX:77115896-77119665 (+)
FVB/NJ	ENSMUSG00205020843	protein coding gene	ChrX:77115898-77118889 (+)
JF1/MsJ	ENSUMUG00000023975	lncRNA gene	ChrX:110983098-110986867 (+)
LP/J	ENSMUSG00230014546	lncRNA gene	ChrX:97040585-97044354 (+)
LP/J	ENSMUSG00230011093	protein coding gene	ChrX:97040587-97043578 (+)
NOD/ShiLtJ	ENSMUSG00190019092	lncRNA gene	ChrX:77035206-77038975 (+)
NOD/ShiLtJ	ENSMUSG00190017881	protein coding gene	ChrX:77035208-77038199 (+)
NZO/HlLtJ	ENSMUSG00225046294	lncRNA gene	ChrX:102171827-102175596 (+)
NZO/HlLtJ	ENSMUSG00225044992	protein coding gene	ChrX:102171829-102174820 (+)
PWK/PhJ	ENSLUMG00010039867	lncRNA gene	ChrX:76278299-76282068 (+)
SPRET/EiJ	ENSMSPG00010033880	lncRNA gene	ChrX:80396024-80400036 (+)
WSB/EiJ	ENSIUOG00005042909	lncRNA gene	ChrX:77663506-77667275 (+)

Homology

• Gene Tree
  Mir223hg
  

Expression

• Assay Results
  606
• Tissues
  8
• cDNA Data
  11
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  57
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000078122 (Evidence)
• NCBI Gene
  100038363

Representative Sequences			Length	Strain/Species
genomic	100038363	NCBI Gene Model | MGI Sequence Detail	3717	C57BL/6J
transcript	NR_030718	RefSeq | MGI Sequence Detail	2796	C57BL/6
polypeptide	Q3TDG6	UniProt | EBI | MGI Sequence Detail	72	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 12

  cDNA 11

  Primer pair 1

Other
Accession IDs

MGI:3801789, MGI:7571250

References

• Summaries
  All 15

  Developmental Gene Expression 1
• Earliest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398
• Latest
  J:306687 Xu S, et al., TLR4 promotes microglial pyroptosis via lncRNA-F630028O10Rik by activating PI3K/AKT pathway after spinal cord injury. Cell Death Dis. 2020 Aug 10;11(8):693

TSS for Mir223hg:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161561	ChrX:95283541-95283554 (+)	16 bp
Tssr161562	ChrX:95284095-95284097 (+)	564 bp