Trpc5os Gene Detail

Summary

• Symbol
  Trpc5os
• Name
  transient receptor potential cation channel, subfamily C, member 5, opposite strand
• Synonyms
  ENSMUSG00000072934, Gm15070

• Feature Type
  protein coding gene
• IDs
  MGI:3641805
  NCBI Gene: 100503240
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:143239577-143260062 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 65.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641805	protein coding gene	ChrX:143238872-143260062 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004745	antisense lncRNA gene	ChrX:142017374-142039714 (+)
A/J	MGP_AJ_G0004723	antisense lncRNA gene	ChrX:141326316-141349519 (+)
AKR/J	MGP_AKRJ_G0004706	antisense lncRNA gene	ChrX:145945489-145967315 (+)
BALB/cJ	MGP_BALBcJ_G0004707	antisense lncRNA gene	ChrX:139571074-139591518 (+)
C3H/HeJ	MGP_C3HHeJ_G0004655	antisense lncRNA gene	ChrX:142115566-142136021 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004857	antisense lncRNA gene	ChrX:146036413-146056165 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004293	antisense lncRNA gene	ChrX:132897735-132918416 (+)
CAST/EiJ	MGP_CASTEiJ_G0004612	antisense lncRNA gene	ChrX:122766940-122789899 (+)
CBA/J	MGP_CBAJ_G0004649	antisense lncRNA gene	ChrX:150535701-150555832 (+)
DBA/2J	MGP_DBA2J_G0004665	antisense lncRNA gene	ChrX:140420561-140441803 (+)
FVB/NJ	MGP_FVBNJ_G0004683	antisense lncRNA gene	ChrX:139629405-139650244 (+)
LP/J	MGP_LPJ_G0004746	antisense lncRNA gene	ChrX:142964540-142987009 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0004857	antisense lncRNA gene	ChrX:141322029-141342695 (+)
PWK/PhJ	MGP_PWKPhJ_G0004563	antisense lncRNA gene	ChrX:119552704-119573496 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004497	antisense lncRNA gene	ChrX:123315607-123344113 (+)
WSB/EiJ	MGP_WSBEiJ_G0004655	antisense lncRNA gene	ChrX:139663397-139684259 (+)

Homology

• Human Ortholog
  TRPC5OS, TRPC5 opposite strand

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRPC5OS, TRPC5 opposite strand
  
• Synonyms
  TRPC5-AS1
• Links
  HGNC:40593

  NCBI Gene ID: 100329135

  neXtProt AC: NX_A6NMA1

  UniProt: A6NMA1

  
  
• Chr Location
  chrX:111876051-111903990 (+)  GRCh38

---

• MGI Vertebrate Homology
  Trpc5os stringent orthology
  1 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: TRPC5OS
• Gene Tree
  Trpc5os
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  8
• UniProt
  1
• CCDS
  CCDS85811.1

• Ensembl
  ENSMUSG00000072934 (Evidence)
• NCBI Gene
  100503240

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072934	Ensembl Gene Model | MGI Sequence Detail	20486	C57BL/6J
transcript	ENSMUST00000155206	Ensembl | MGI Sequence Detail	3585	Not Applicable
polypeptide	ENSMUSP00000148184	Ensembl | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000035111 putative uncharacterized protein TRPC5OS homolog
  (term hierarchy)

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;

TSS for Trpc5os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162294	ChrX:143238912-143238920 (+)	-661 bp
Tssr162295	ChrX:143238946-143238957 (+)	-625 bp