Gm10858 Gene Detail

Summary

• Symbol
  Gm10858
• Name
  predicted gene 10858

• Feature Type
  lncRNA gene
• IDs
  MGI:3641732
  NCBI Gene: 115490216
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:146831850-146833907 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 86.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641732	lncRNA gene	Chr5:146819428-146833990 (-)
129S1/SvImJ	ENSMUSG00200041908	lncRNA gene	Chr5:140653776-140668304 (-)
A/J	ENSMUSG00195045876	lncRNA gene	Chr5:140258827-140273339 (-)
AKR/J	ENSMUSG00220023842	lncRNA gene	Chr5:139265504-139279905 (-)
BALB/cJ	ENSMUSG00180035802	lncRNA gene	Chr5:140641294-140655813 (-)
C3H/HeJ	ENSMUSG00175012212	lncRNA gene	Chr5:142484379-142498895 (-)
C57BL/6NJ	ENSMUSG00215040949	lncRNA gene	Chr5:140208780-140223292 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037012	lncRNA gene	Chr5:139781643-139796712 (-)
CBA/J	ENSMUSG00210024473	lncRNA gene	Chr5:141401569-141415970 (-)
DBA/2J	ENSMUSG00185043175	lncRNA gene	Chr5:144370301-144384803 (-)
FVB/NJ	ENSMUSG00205043935	lncRNA gene	Chr5:140019753-140034243 (-)
JF1/MsJ	ENSUMUG00000052369	lncRNA gene	Chr5:146860131-146875740 (-)
LP/J	ENSMUSG00230030948	lncRNA gene	Chr5:148370704-148385228 (-)
NOD/ShiLtJ	ENSMUSG00190045163	lncRNA gene	Chr5:140012949-140027490 (-)
NZO/HlLtJ	ENSMUSG00225008998	lncRNA gene	Chr5:156115759-156130160 (-)
PWK/PhJ	ENSLUMG00010020684	lncRNA gene	Chr5:139097030-139112343 (-)
SPRET/EiJ	ENSMSPG00010006676	lncRNA gene	Chr5:141905066-141919602 (-)
WSB/EiJ	ENSIUOG00005041300	lncRNA gene	Chr5:142788929-142803507 (-)

Homology

• Gene Tree
  Gm10858
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000120797 (Evidence)
• NCBI Gene
  115490216

Representative Sequences			Length	Strain/Species
genomic	115490216	NCBI Gene Model | MGI Sequence Detail	2058	C57BL/6J
transcript	NR_165291	RefSeq | MGI Sequence Detail	1283	C57BL/6
polypeptide	Q3U0S7	UniProt | EBI | MGI Sequence Detail	123	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm10858:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54492	Chr5:146833901-146833911 (-)	1 bp
Tssr54491	Chr5:146833849-146833869 (-)	48 bp