Runx2os1 Gene Detail

Summary

• Symbol
  Runx2os1
• Name
  runt related transcription factor 2, opposite strand 1
• Synonyms
  Gm10497

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3641707
  NCBI Gene: 100038355
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:45045606-45048508 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 21.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641707	antisense lncRNA gene	Chr17:45045606-45048508 (+)
129S1/SvImJ	ENSMUSG00200052285	lncRNA gene	Chr17:40251100-40252871 (+)
A/J	ENSMUSG00195023048	lncRNA gene	Chr17:41752812-41754571 (+)
AKR/J	ENSMUSG00220052973	lncRNA gene	Chr17:40721532-40723300 (+)
BALB/cJ	ENSMUSG00180025763	lncRNA gene	Chr17:41489026-41490793 (+)
C3H/HeJ	ENSMUSG00175017014	lncRNA gene	Chr17:40803126-40804892 (+)
C57BL/6NJ	ENSMUSG00215053873	lncRNA gene	Chr17:40367221-40368988 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003030	antisense lncRNA gene	Chr17:41447507-41449241 (+)
CAST/EiJ	ENSTCUG00005026494	lncRNA gene	Chr17:41549603-41551359 (+)
CBA/J	ENSMUSG00210052487	lncRNA gene	Chr17:40552889-40554656 (+)
DBA/2J	ENSMUSG00185030962	lncRNA gene	Chr17:43469757-43471524 (+)
FVB/NJ	ENSMUSG00205053351	lncRNA gene	Chr17:41035970-41037742 (+)
JF1/MsJ	ENSUMUG00000036759	lncRNA gene	Chr17:43096680-43098438 (+)
LP/J	ENSMUSG00230041881	lncRNA gene	Chr17:44363185-44364930 (+)
NOD/ShiLtJ	ENSMUSG00190053860	lncRNA gene	Chr17:40446464-40448223 (+)
NZO/HlLtJ	ENSMUSG00225044175	lncRNA gene	Chr17:46615232-46616989 (+)
PWK/PhJ	ENSLUMG00010046903	lncRNA gene	Chr17:40331384-40333152 (+)
SPRET/EiJ	ENSMSPG00010051377	lncRNA gene	Chr17:40535383-40537155 (+)
WSB/EiJ	ENSIUOG00005028707	lncRNA gene	Chr17:41417152-41418909 (+)

Homology

• Gene Tree
  Runx2os1
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000073394 (Evidence)
• NCBI Gene
  100038355

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073394	Ensembl Gene Model | MGI Sequence Detail	2903	C57BL/6J
transcript	ENSMUST00000097320	Ensembl | MGI Sequence Detail	801	Not Applicable
polypeptide	Q3TXX5	UniProt | EBI | MGI Sequence Detail	183	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Runx2os1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144758	Chr17:45045030-45045062 (+)	-560 bp
Tssr144759	Chr17:45046654-45046670 (+)	1,056 bp
Tssr144760	Chr17:45047095-45047106 (+)	1,495 bp