G730003C15Rik Gene Detail

Summary

• Symbol
  G730003C15Rik
• Name
  RIKEN cDNA G730003C15 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3641700
  NCBI Gene: 100038354
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:59158983-59161300 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  183 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641700	lncRNA gene	Chr1:59158983-59161300 (+)
129S1/SvImJ	ENSMUSG00200019116	lncRNA gene	Chr1:56659334-56661646 (+)
A/J	ENSMUSG00195031161	lncRNA gene	Chr1:56197087-56199382 (+)
AKR/J	ENSMUSG00220040877	lncRNA gene	Chr1:56287276-56289571 (+)
BALB/cJ	ENSMUSG00180014681	lncRNA gene	Chr1:56438713-56441008 (+)
C3H/HeJ	ENSMUSG00175001200	lncRNA gene	Chr1:56574539-56576834 (+)
C57BL/6NJ	ENSMUSG00215033660	lncRNA gene	Chr1:56506381-56508693 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002340	antisense lncRNA gene	Chr1:52837692-52840063 (+)
CAST/EiJ	ENSTCUG00005013811	lncRNA gene	Chr1:56349317-56351584 (+)
CBA/J	ENSMUSG00210054118	lncRNA gene	Chr1:56259538-56261850 (+)
DBA/2J	ENSMUSG00185055243	lncRNA gene	Chr1:57379255-57381567 (+)
FVB/NJ	ENSMUSG00205027297	lncRNA gene	Chr1:56220393-56222688 (+)
JF1/MsJ	ENSUMUG00000045315	lncRNA gene	Chr1:56341938-56344249 (+)
LP/J	ENSMUSG00230030103	lncRNA gene	Chr1:57379864-57382176 (+)
NOD/ShiLtJ	ENSMUSG00190040727	lncRNA gene	Chr1:56419795-56422090 (+)
NZO/HlLtJ	ENSMUSG00225009151	lncRNA gene	Chr1:60586726-60589038 (+)
PWK/PhJ	ENSLUMG00010026982	lncRNA gene	Chr1:55860135-55862446 (+)
SPRET/EiJ	ENSMSPG00010026693	lncRNA gene	Chr1:57802357-57804657 (+)
WSB/EiJ	ENSIUOG00005021576	lncRNA gene	Chr1:56044323-56046630 (+)

Homology

• Gene Tree
  G730003C15Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving G730003C15Rik
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• UniProt
  1

• Ensembl
  ENSMUSG00000097573 (Evidence)
• NCBI Gene
  100038354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097573	Ensembl Gene Model | MGI Sequence Detail	2318	C57BL/6J
transcript	ENSMUST00000180570	Ensembl | MGI Sequence Detail	2316	Not Applicable
polypeptide	Q3UN03	UniProt | EBI | MGI Sequence Detail	145	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:7938 Juriloff DM, et al., Genetic and developmental studies of a new mouse mutation that produces otocephaly. J Craniofac Genet Dev Biol. 1985;5(2):121-45

TSS for G730003C15Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6858	Chr1:59158981-59159020 (+)	18 bp