Gm10802 Gene Detail

Summary

• Symbol
  Gm10802
• Name
  predicted gene 10802

• Feature Type
  lncRNA gene
• IDs
  MGI:3641658
  NCBI Gene: 100038352
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr19:10817527-10819126 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  148 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641658	lncRNA gene	Chr19:10817527-10819126 (-)
129S1/SvImJ	ENSMUSG00200053334	lncRNA gene	Chr19:7496580-7498179 (-)
A/J	ENSMUSG00195054165	lncRNA gene	Chr19:7711562-7713161 (-)
AKR/J	ENSMUSG00220052112	lncRNA gene	Chr19:7617456-7619055 (-)
BALB/cJ	ENSMUSG00180052113	lncRNA gene	Chr19:8071313-8072912 (-)
C3H/HeJ	ENSMUSG00175014694	lncRNA gene	Chr19:7343065-7344664 (-)
C57BL/6NJ	ENSMUSG00215048496	lncRNA gene	Chr19:7413901-7415500 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045360	lncRNA gene	Chr19:7212435-7214076 (-)
CBA/J	ENSMUSG00210050809	lncRNA gene	Chr19:7541657-7543256 (-)
DBA/2J	ENSMUSG00185052902	lncRNA gene	Chr19:7951382-7952981 (-)
FVB/NJ	ENSMUSG00205053093	lncRNA gene	Chr19:7433872-7435467 (-)
JF1/MsJ	ENSUMUG00000056865	lncRNA gene	Chr19:8058610-8060227 (-)
LP/J	ENSMUSG00230054264	lncRNA gene	Chr19:8871225-8872824 (-)
NOD/ShiLtJ	ENSMUSG00190053131	lncRNA gene	Chr19:7169146-7170745 (-)
NZO/HlLtJ	ENSMUSG00225047288	lncRNA gene	Chr19:12580075-12581674 (-)
PWK/PhJ	ENSLUMG00010008780	lncRNA gene	Chr19:7458941-7460558 (-)
SPRET/EiJ	ENSMSPG00010051432	lncRNA gene	Chr19:7304485-7306117 (-)
WSB/EiJ	ENSIUOG00005051338	lncRNA gene	Chr19:7061106-7062705 (-)

Homology

• Gene Tree
  Gm10802
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000118027 (Evidence)
• NCBI Gene
  100038352

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118027	Ensembl Gene Model | MGI Sequence Detail	1600	C57BL/6J
transcript	ENSMUST00000235514	Ensembl | MGI Sequence Detail	1600	Not Applicable
polypeptide	Q3U1Q6	UniProt | EBI | MGI Sequence Detail	110	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm10802:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr158248	Chr19:10820227-10820309 (-)	-1,142 bp
Tssr158247	Chr19:10819070-10819084 (-)	49 bp