C130021I20Rik Gene Detail

Summary

• Symbol
  C130021I20Rik
• Name
  Riken cDNA C130021I20 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3639863
  NCBI Gene: 100504399
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr2:33531205-33535675 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 22.50 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3639863	lncRNA gene	Chr2:33531205-33556659 (+)
129S1/SvImJ	ENSMUSG00200048681	lncRNA gene	Chr2:30503697-30508858 (+)
A/J	ENSMUSG00195039954	lncRNA gene	Chr2:30606976-30612142 (+)
AKR/J	ENSMUSG00220044864	lncRNA gene	Chr2:30724908-30730071 (+)
BALB/cJ	ENSMUSG00180050060	lncRNA gene	Chr2:30620021-30625182 (+)
C3H/HeJ	ENSMUSG00175046609	lncRNA gene	Chr2:30586405-30591566 (+)
C57BL/6NJ	ENSMUSG00215047569	lncRNA gene	Chr2:30651887-30657049 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003166	antisense lncRNA gene	Chr2:29542567-29547734 (+)
CAST/EiJ	ENSTCUG00005017779	lncRNA gene	Chr2:30332885-30338049 (+)
CBA/J	ENSMUSG00210049863	lncRNA gene	Chr2:30658900-30664061 (+)
DBA/2J	ENSMUSG00185048406	lncRNA gene	Chr2:30520094-30525259 (+)
FVB/NJ	ENSMUSG00205037893	lncRNA gene	Chr2:30366493-30371658 (+)
JF1/MsJ	ENSUMUG00000015667	lncRNA gene	Chr2:30413653-30418822 (+)
LP/J	ENSMUSG00230046909	lncRNA gene	Chr2:32439164-32444325 (+)
NOD/ShiLtJ	ENSMUSG00190044336	lncRNA gene	Chr2:30621431-30626596 (+)
NZO/HlLtJ	ENSMUSG00225010588	lncRNA gene	Chr2:40192651-40197814 (+)
PWK/PhJ	ENSLUMG00010043845	lncRNA gene	Chr2:30512304-30517460 (+)
SPRET/EiJ	ENSMSPG00010043832	lncRNA gene	Chr2:31219226-31224341 (+)
WSB/EiJ	ENSIUOG00005041081	lncRNA gene	Chr2:30476947-30482111 (+)

Homology

• Gene Tree
  C130021I20Rik
  

Expression

• Assay Results
  663
• Tissues
  8
• cDNA Data
  23
• Literature Summary
  5

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000052951 (Evidence)
• NCBI Gene
  100504399

Representative Sequences			Length	Strain/Species
genomic	100504399	NCBI Gene Model | MGI Sequence Detail	4471	C57BL/6J
transcript	NR_046275	RefSeq | MGI Sequence Detail	3815	C57BL/6
polypeptide	Q3UGR3	UniProt | EBI | MGI Sequence Detail	154	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 23

  cDNA 23

  
  

  Microarray probesets 3

References

• Summaries
  All 18

  Developmental Gene Expression 5
• Earliest
  J:109564 Li MZ, et al., Molecular mapping of developing dorsal horn-enriched genes by microarray and dorsal/ventral subtractive screening. Dev Biol. 2006 Apr 15;292(2):555-64
• Latest
  J:206496 Hoekstra EJ, et al., Lmx1a encodes a rostral set of mesodiencephalic dopaminergic neurons marked by the Wnt/B-catenin signaling activator R-spondin 2. PLoS One. 2013;8(9):e74049

TSS for C130021I20Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17391	Chr2:33531066-33531080 (+)	-132 bp
Tssr17392	Chr2:33531262-33531275 (+)	64 bp
Tssr17393	Chr2:33531279-33531334 (+)	102 bp
Tssr17394	Chr2:33531339-33531349 (+)	139 bp
Tssr17395	Chr2:33532608-33532616 (+)	1,407 bp