BC106175 Pseudogene Detail

Summary

• Symbol
  BC106175
• Name
  cDNA sequence BC106175

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3628444
  NCBI Gene: 724112
• Alliance
  genome feature page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr12:8528874-8532207 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 3.88 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  199 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3628444	pseudogene	Chr12:8528874-8532207 (-)
129S1/SvImJ	ENSMUSG00200024279	pseudogene	Chr12:5499549-5502832 (-)
A/J	ENSMUSG00195017460	pseudogene	Chr12:5540179-5543461 (-)
AKR/J	ENSMUSG00220031865	pseudogene	Chr12:5572822-5576105 (-)
BALB/cJ	ENSMUSG00180015126	pseudogene	Chr12:5532718-5535998 (-)
C3H/HeJ	ENSMUSG00175009566	pseudogene	Chr12:5529719-5533002 (-)
C57BL/6NJ	ENSMUSG00215025792	pseudogene	Chr12:5457224-5460505 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022872	pseudogene	Chr12:5316991-5320327 (-)
CBA/J	ENSMUSG00210013601	pseudogene	Chr12:5560520-5563803 (-)
DBA/2J	ENSMUSG00185021639	pseudogene	Chr12:5503295-5506578 (-)
FVB/NJ	ENSMUSG00205003622	pseudogene	Chr12:5305978-5309261 (-)
JF1/MsJ	ENSUMUG00000035891	pseudogene	Chr12:5474145-5477513 (-)
LP/J	ENSMUSG00230012608	pseudogene	Chr12:7333241-7336524 (-)
NOD/ShiLtJ	ENSMUSG00190008001	pseudogene	Chr12:6747487-6750770 (-)
NZO/HlLtJ	ENSMUSG00225019563	pseudogene	Chr12:9413495-9416776 (-)
PWK/PhJ	ENSLUMG00010016965	pseudogene	Chr12:5286453-5289790 (-)
SPRET/EiJ	ENSMSPG00010005237	pseudogene	Chr12:5838784-5842219 (-)
WSB/EiJ	ENSIUOG00005002467	pseudogene	Chr12:5538489-5541771 (-)

Expression

• Assay Results
  21
• Tissues
  16
• cDNA Data
  4
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  4

• Ensembl
  ENSMUSG00000112657 (Evidence), ENSMUSG00000121738 (Evidence)
• NCBI Gene
  724112

Representative Sequences			Length	Strain/Species
genomic	724112	NCBI Gene Model | MGI Sequence Detail	3334	C57BL/6J
transcript	NR_183073	RefSeq | MGI Sequence Detail	1347	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 4

  Primer pair 1

References

• Summaries
  All 7

  Developmental Gene Expression 1
• Earliest
  J:106181 Chiellini C, et al., Identification of cathepsin K as a novel marker of adiposity in white adipose tissue. J Cell Physiol. 2003 May;195(2):309-21

TSS for BC106175:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr115711	Chr12:8532153-8532216 (-)	22 bp
Tssr115710	Chr12:8532134-8532139 (-)	70 bp
Tssr115709	Chr12:8532120-8532129 (-)	82 bp
Tssr115708	Chr12:8532106-8532107 (-)	100 bp
Tssr3787	Chr12:8530561-8530562 (-)	1,645 bp
Tssr3786	Chr12:8530307-8530312 (-)	1,897 bp
Tssr115707	Chr12:8530244-8530252 (-)	1,959 bp
Tssr115706	Chr12:8530212-8530229 (-)	1,986 bp
Tssr115705	Chr12:8530200-8530208 (-)	2,003 bp
Tssr115704	Chr12:8530068-8530071 (-)	2,137 bp
Tssr115703	Chr12:8530057-8530060 (-)	2,148 bp