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Mir540 Gene Detail
Summary
  • Symbol
    Mir540
  • Name
    microRNA 540
  • Synonyms
    mir 540, Mirn540, mmu-mir-540
Location &
Maps
more
  • Sequence Map
    Chr12:109552514-109552580 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 12, 60.37 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    20 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3619429
 miRNA gene Chr12:109552514-109552580 (+)
129S1/SvImJ ENSMUSG00200028311
 miRNA gene Chr12:101326267-101326333 (+)
A/J ENSMUSG00195047499
 miRNA gene Chr12:103857973-103858039 (+)
AKR/J ENSMUSG00220042342
 miRNA gene Chr12:101740526-101740592 (+)
BALB/cJ ENSMUSG00180048604
 miRNA gene Chr12:103089417-103089483 (+)
C3H/HeJ ENSMUSG00175045327
 miRNA gene Chr12:105668488-105668554 (+)
C57BL/6NJ ENSMUSG00215050071
 miRNA gene Chr12:102362372-102362438 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0007244
 miRNA gene Chr12:104035479-104035545 (+)
CAST/EiJ ENSTCUG00005022142
 miRNA gene Chr12:101841187-101841253 (+)
CBA/J ENSMUSG00210041436
 miRNA gene Chr12:102729941-102730007 (+)
DBA/2J ENSMUSG00185029640
 miRNA gene Chr12:104548678-104548744 (+)
FVB/NJ ENSMUSG00205041916
 miRNA gene Chr12:101774279-101774345 (+)
JF1/MsJ ENSUMUG00000034182
 miRNA gene Chr12:109306395-109306461 (+)
LP/J ENSMUSG00230031504
 miRNA gene Chr12:111591165-111591231 (+)
NOD/ShiLtJ ENSMUSG00190031653
 miRNA gene Chr12:83448900-83448966 (-)
NZO/HlLtJ ENSMUSG00225039334
 miRNA gene Chr12:113350036-113350102 (+)
PWK/PhJ ENSLUMG00010051326
 miRNA gene Chr12:102778824-102778890 (+)
SPRET/EiJ ENSMSPG00010020002
 miRNA gene Chr12:105062226-105062292 (+)
WSB/EiJ ENSIUOG00005010143
 miRNA gene Chr12:101771731-101771797 (+)



Homology
less
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    691
  • Tissues
    15
  • Literature Summary
    3
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 723880 NCBI Gene Model | MGI Sequence Detail 67 C57BL/6J ±  kb
transcript NR_030260 RefSeq | MGI Sequence Detail 67 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    Other 2
Other Database
Links
less
miRBase MI0003518
References
more
  • Summaries
    All 14
    Developmental Gene Expression 3
    Gene Ontology 3
  • Earliest
    J:106122 Sewer A, et al., Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics. 2005;6:267
  • Latest
    J:281273 Zhu W, et al., Meg3-DMR, not the Meg3 gene, regulates imprinting of the Dlk1-Dio3 locus. Dev Biol. 2019 Nov 1;455(1):10-18
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory