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Mir339 Gene Detail
Summary
  • Symbol
    Mir339
  • Name
    microRNA 339
  • Synonyms
    mir 339, Mirn339, mmu-mir-339
Location &
Maps
more
  • Sequence Map
    Chr5:139355405-139355500 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 78.47 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    104 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3619354
 miRNA gene Chr5:139355405-139355500 (-)
129S1/SvImJ ENSMUSG00200041794
 miRNA gene Chr5:133223906-133224001 (-)
A/J ENSMUSG00195045832
 miRNA gene Chr5:132844473-132844568 (-)
AKR/J ENSMUSG00220023070
 miRNA gene Chr5:132106587-132106682 (-)
BALB/cJ ENSMUSG00180033736
 miRNA gene Chr5:132940933-132941028 (-)
C3H/HeJ ENSMUSG00175049186
 miRNA gene Chr5:134869159-134869254 (-)
C57BL/6NJ ENSMUSG00215042152
 miRNA gene Chr5:132799618-132799713 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0007995
 miRNA gene Chr5:132090000-132090095 (-)
CAST/EiJ ENSTCUG00005035429
 miRNA gene Chr5:132269477-132269572 (-)
CBA/J ENSMUSG00210024040
 miRNA gene Chr5:133686365-133686460 (-)
DBA/2J ENSMUSG00185055513
 miRNA gene Chr5:136701708-136701803 (-)
FVB/NJ ENSMUSG00205049589
 miRNA gene Chr5:132501709-132501804 (-)
JF1/MsJ ENSUMUG00000054566
 miRNA gene Chr5:139584001-139584096 (-)
LP/J ENSMUSG00230049415
 miRNA gene Chr5:140814762-140814857 (-)
NOD/ShiLtJ ENSMUSG00190046551
 miRNA gene Chr5:132640556-132640651 (-)
NZO/HlLtJ ENSMUSG00225023975
 miRNA gene Chr5:148288299-148288394 (-)
PWK/PhJ ENSLUMG00010022273
 miRNA gene Chr5:131312669-131312764 (-)
SPRET/EiJ ENSMSPG00010039904
 miRNA gene Chr5:134904496-134904591 (-)
WSB/EiJ ENSIUOG00005039751
 miRNA gene Chr5:135183214-135183309 (-)



Homology
more
  • Human Ortholog
    MIR339, microRNA 339
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    MIR339, microRNA 339
  • Synonyms
    hsa-mir-339, mir-339, MIRN339
  • Links
    NCBI Gene ID: 442907

  • Chr Location
    chr7:1022933-1023026 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    3 phenotype references
Mice homozygous for a targeted deletion are viable with no observed pathologies.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    664
  • Tissues
    11
  • Literature Summary
    5
Sequences &
Gene Models
less
  • All Sequences
    24
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 723898 NCBI Gene Model | MGI Sequence Detail 96 C57BL/6J ±  kb
transcript NR_029768 RefSeq | MGI Sequence Detail 96 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 4
    Primer pair 2
    Other 2
Other Database
Links
less
miRBase MI0000621
References
more
  • Summaries
    All 17
    Developmental Gene Expression 5
    Gene Ontology 3
    Phenotypes 3
  • Earliest
    J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
  • Latest
    J:297788 Mei L, et al., Paeonol attenuates inflammation by targeting HMGB1 through upregulating miR-339-5p. Sci Rep. 2019 Dec 18;9(1):19370
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory