Slc39a1-ps Pseudogene Detail

Summary

• Symbol
  Slc39a1-ps
• Name
  solute carrier family 39 (zinc transporter), member 1, pseudogene

• Feature Type
  pseudogene
• IDs
  MGI:3615375
  NCBI Gene: 194642
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:30049410-30050378 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 21.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3615375	pseudogene	Chr2:30049295-30051612 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Slc39a1-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000085401 (Evidence)
• NCBI Gene
  194642

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085401	Ensembl Gene Model | MGI Sequence Detail	969	C57BL/6J
transcript	ENSMUST00000120862	Ensembl | MGI Sequence Detail	969	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:57132 Lioumi M, et al., Isolation and characterization of human and mouse ZIRTL, a member of the IRT1 family of transporters, mapping within the epidermal differentiation complex. Genomics. 1999 Dec 1;62(2):272-80
• Latest
  J:87178 Dufner-Beattie J, et al., Structure, function, and regulation of a subfamily of mouse zinc transporter genes. J Biol Chem. 2003 Dec 12;278(50):50142-50