4933427I04Rik Gene Detail

Summary

• Symbol
  4933427I04Rik
• Name
  Riken cDNA 4933427I04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3613760
  NCBI Gene: 115489902
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:123753453-123756962 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 57.42 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3613760	lncRNA gene	Chr4:123753446-123756962 (+)
129S1/SvImJ	ENSMUSG00200014735	lncRNA gene	Chr4:117191626-117195112 (+)
A/J	ENSMUSG00195034909	lncRNA gene	Chr4:118514118-118517604 (+)
AKR/J	ENSMUSG00220022509	lncRNA gene	Chr4:117488207-117491693 (+)
BALB/cJ	ENSMUSG00180046422	lncRNA gene	Chr4:116167501-116170978 (+)
C3H/HeJ	ENSMUSG00175026765	lncRNA gene	Chr4:117180428-117183905 (+)
C57BL/6NJ	ENSMUSG00215039638	lncRNA gene	Chr4:118665294-118668781 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026441	protein coding gene	Chr4:113637376-113640375 (+)
CAST/EiJ	ENSTCUG00005046164	lncRNA gene	Chr4:118022197-118023755 (+)
CBA/J	ENSMUSG00210052655	lncRNA gene	Chr4:116809355-116812832 (+)
DBA/2J	ENSMUSG00185047419	lncRNA gene	Chr4:118341993-118345470 (+)
FVB/NJ	ENSMUSG00205029345	lncRNA gene	Chr4:116535529-116539016 (+)
JF1/MsJ	ENSUMUG00000026662	lncRNA gene	Chr4:118948885-118952370 (+)
LP/J	ENSMUSG00230047159	lncRNA gene	Chr4:122129591-122133077 (+)
NOD/ShiLtJ	ENSMUSG00190045062	lncRNA gene	Chr4:116533869-116537355 (+)
NZO/HlLtJ	ENSMUSG00225016634	lncRNA gene	Chr4:128035118-128038604 (+)
PWK/PhJ	ENSLUMG00010048109	lncRNA gene	Chr4:115979108-115982428 (+)
SPRET/EiJ	ENSMSPG00010041742	lncRNA gene	Chr4:118088807-118091976 (+)
WSB/EiJ	ENSIUOG00005048571	lncRNA gene	Chr4:116401974-116405460 (+)

Homology

• Gene Tree
  4933427I04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving 4933427I04Rik
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  14 strains or lines available

Expression

• Assay Results
  619
• Tissues
  22
• cDNA Data
  2
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000073761 (Evidence)
• NCBI Gene
  115489902

Representative Sequences			Length	Strain/Species
genomic	115489902	NCBI Gene Model | MGI Sequence Detail	3510	C57BL/6J
transcript	NR_165172	RefSeq | MGI Sequence Detail	2206	C57BL/6
polypeptide	Q3V053	UniProt | EBI | MGI Sequence Detail	235	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 2

  Primer pair 1

References

• Summaries
  All 15

  Developmental Gene Expression 1

  Phenotypes 6
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for 4933427I04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38869	Chr4:123753444-123753493 (+)	16 bp