Pisd-ps2 Pseudogene Detail

Summary

• Symbol
  Pisd-ps2
• Name
  phosphatidylserine decarboxylase, pseudogene 2
• Synonyms
  D030013I16Rik

• Feature Type
  pseudogene
• IDs
  MGI:3612472
  NCBI Gene: 328734
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:3126853-3134357 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 1.95 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  231 from dbSNP Build 142
• Strain Annotations
  25

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3612472	pseudogene	Chr17:3114593-3134458 (-)
129S1/SvImJ	ENSMUSG00200035115	pseudogene	Chr17:9213-15248 (-)
A/J	ENSMUSG00195023563	pseudogene	Chr17:35575-43185 (-)
A/J	ENSMUSG00195023348	protein coding gene	Chr17:21319-43736 (-)
AKR/J	ENSMUSG00220025252	protein coding gene	Chr17:214023-229962 (-)
AKR/J	ENSMUSG00220030833	pseudogene	Chr17:221654-229261 (-)
BALB/cJ	ENSMUSG00180025940	pseudogene	Chr17:47485-55097 (-)
C3H/HeJ	ENSMUSG00175037140	pseudogene	Chr17:7629-15239 (-)
C3H/HeJ	ENSMUSG00175030287	protein coding gene	Chr17:9-15940 (-)
C57BL/6NJ	ENSMUSG00215023111	protein coding gene	Chr17:1-15784 (-)
C57BL/6NJ	ENSMUSG00215033173	pseudogene	Chr17:7631-15233 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210042215	pseudogene	Chr17:24697-32307 (-)
CBA/J	ENSMUSG00210033861	protein coding gene	Chr17:17070-33008 (-)
DBA/2J	ENSMUSG00185021793	protein coding gene	Chr17:81385-103794 (-)
DBA/2J	ENSMUSG00185023482	pseudogene	Chr17:95637-103243 (-)
FVB/NJ	ENSMUSG00205010396	pseudogene	Chr17:40697-48316 (-)
JF1/MsJ	ENSUMUG00000037147	pseudogene	Chr17:72723-80310 (-)
LP/J	ENSMUSG00230034035	pseudogene	Chr17:1204324-1211929 (-)
LP/J	ENSMUSG00230031388	protein coding gene	Chr17:1190072-1212480 (-)
NOD/ShiLtJ	ENSMUSG00190030861	protein coding gene	Chr17:1-15938 (-)
NOD/ShiLtJ	ENSMUSG00190041803	pseudogene	Chr17:7631-15237 (-)
NZO/HlLtJ	ENSMUSG00225029224	pseudogene	Chr17:3495241-3502846 (-)
NZO/HlLtJ	ENSMUSG00225028919	protein coding gene	Chr17:3480989-3503397 (-)
PWK/PhJ	ENSLUMG00010019236	pseudogene	Chr17:104885-112461 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005014918	pseudogene	Chr17:70145-77725 (-)

Homology

• Gene Tree
  Pisd-ps2
  

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000023795 (Evidence)
• NCBI Gene
  328734

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000023795	Ensembl Gene Model | MGI Sequence Detail	7505	C57BL/6J
transcript	ENSMUST00000142526	Ensembl | MGI Sequence Detail	1175	Not Applicable
polypeptide	V9H190	UniProt | EBI | MGI Sequence Detail	184	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR003817 Phosphatidylserine decarboxylase-related

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Pisd-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146273	Chr17:3133124-3133138 (-)	1,226 bp