C530005A16Rik Gene Detail

Summary

• Symbol
  C530005A16Rik
• Name
  RIKEN cDNA C530005A16 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3612454
  NCBI Gene: 654318
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:116446930-116454827 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 53.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3612454	lncRNA gene	Chr4:116446930-116454827 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015569	unclassified non-coding RNA gene	Chr4:117492779-117501533 (-)
A/J	MGP_AJ_G0015546	unclassified non-coding RNA gene	Chr4:112987995-112996516 (-)
AKR/J	MGP_AKRJ_G0015510	unclassified non-coding RNA gene	Chr4:115429075-115437904 (-)
BALB/cJ	MGP_BALBcJ_G0015508	unclassified non-coding RNA gene	Chr4:113613584-113621720 (-)
C3H/HeJ	MGP_C3HHeJ_G0015330	unclassified non-coding RNA gene	Chr4:116999074-117008314 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015961	unclassified non-coding RNA gene	Chr4:122037017-122044835 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013697	unclassified non-coding RNA gene	Chr4:107025380-107032853 (-)
CAST/EiJ	MGP_CASTEiJ_G0014885	unclassified non-coding RNA gene	Chr4:114225324-114235400 (-)
CBA/J	MGP_CBAJ_G0015311	unclassified non-coding RNA gene	Chr4:125345365-125353131 (-)
DBA/2J	MGP_DBA2J_G0015405	unclassified non-coding RNA gene	Chr4:113618912-113627018 (-)
FVB/NJ	MGP_FVBNJ_G0015412	unclassified non-coding RNA gene	Chr4:112120318-112128256 (-)
LP/J	MGP_LPJ_G0015485	unclassified non-coding RNA gene	Chr4:117699701-117707634 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015435	unclassified non-coding RNA gene	Chr4:130335598-130344423 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016003	unclassified non-coding RNA gene	Chr4:116576821-116584815 (-)
PWK/PhJ	MGP_PWKPhJ_G0014670	unclassified non-coding RNA gene	Chr4:110396442-110404272 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014459	unclassified non-coding RNA gene	Chr4:112851093-112860010 (-)
WSB/EiJ	MGP_WSBEiJ_G0014990	unclassified non-coding RNA gene	Chr4:116454880-116463283 (-)

Homology

• Gene Tree
  C530005A16Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  12
• Chemically induced (other)
  2
• Gene trapped
  8
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving C530005A16Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085408 (Evidence)
• NCBI Gene
  654318

Representative Sequences			Length	Strain/Species
genomic	654318	NCBI Gene Model | MGI Sequence Detail	7898	C57BL/6J
transcript	NR_029450	RefSeq | MGI Sequence Detail	2436	C57BL/6
polypeptide	Q8C383	UniProt | EBI | MGI Sequence Detail	145	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 8
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for C530005A16Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr42887	Chr4:116454801-116454841 (-)	6 bp