D930015M05Rik Gene Detail

Summary

• Symbol
  D930015M05Rik
• Name
  RIKEN cDNA D930015M05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3612068
  NCBI Gene: 320507
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:92239237-92262653 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 51.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  673 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3612068	lncRNA gene	Chr2:92239237-92262654 (+)
129S1/SvImJ	ENSMUSG00200053960	lncRNA gene	Chr2:89155609-89179025 (+)
A/J	ENSMUSG00195053814	lncRNA gene	Chr2:89291042-89314464 (+)
AKR/J	ENSMUSG00220053140	lncRNA gene	Chr2:89085822-89109233 (+)
BALB/cJ	ENSMUSG00180054867	lncRNA gene	Chr2:89190317-89213733 (+)
C3H/HeJ	ENSMUSG00175054262	lncRNA gene	Chr2:89450496-89473909 (+)
C57BL/6NJ	ENSMUSG00215053697	lncRNA gene	Chr2:89282825-89306239 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013576	unclassified non-coding RNA gene	Chr2:86534753-86559750 (+)
CAST/EiJ	ENSTCUG00005052821	lncRNA gene	Chr2:88701552-88725037 (+)
CBA/J	ENSMUSG00210041375	lncRNA gene	Chr2:89462821-89486233 (+)
DBA/2J	ENSMUSG00185057292	lncRNA gene	Chr2:89186695-89210109 (+)
FVB/NJ	ENSMUSG00205052941	lncRNA gene	Chr2:88472379-88495785 (+)
JF1/MsJ	ENSUMUG00000034641	lncRNA gene	Chr2:89007338-89030996 (+)
LP/J	ENSMUSG00230046280	lncRNA gene	Chr2:90937215-90960627 (+)
NOD/ShiLtJ	ENSMUSG00190051921	lncRNA gene	Chr2:89265338-89288752 (+)
NZO/HlLtJ	ENSMUSG00225053932	lncRNA gene	Chr2:98852442-98875838 (+)
PWK/PhJ	ENSLUMG00010051950	lncRNA gene	Chr2:88984066-89007577 (+)
SPRET/EiJ	ENSMSPG00010052191	lncRNA gene	Chr2:90944123-90968341 (+)
WSB/EiJ	ENSIUOG00005053449	lncRNA gene	Chr2:88991408-89014810 (+)

Homology

• Gene Tree
  D930015M05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  4 involving D930015M05Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000084781 (Evidence)
• NCBI Gene
  320507

Representative Sequences			Length	Strain/Species
genomic	320507	NCBI Gene Model | MGI Sequence Detail	23417	C57BL/6J
transcript	NR_040621	RefSeq | MGI Sequence Detail	1190	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 7
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for D930015M05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18947	Chr2:92253204-92253238 (+)	13,984 bp