4932414J04Rik Gene Detail

Summary

• Symbol
  4932414J04Rik
• Name
  RIKEN cDNA 4932414J04 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3605619
  NCBI Gene: 237694
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:21444730-21461180 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 13.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  703 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3605619	lncRNA gene	Chr11:21444633-21461180 (-)
129S1/SvImJ	ENSMUSG00200022454	lncRNA gene	Chr11:18458261-18474716 (-)
A/J	ENSMUSG00195005637	lncRNA gene	Chr11:18308068-18324518 (-)
AKR/J	ENSMUSG00220004003	lncRNA gene	Chr11:18398973-18418079 (-)
BALB/cJ	ENSMUSG00180004217	lncRNA gene	Chr11:18321050-18337522 (-)
C3H/HeJ	ENSMUSG00175008373	lncRNA gene	Chr11:18324172-18340625 (-)
C57BL/6NJ	ENSMUSG00215003587	lncRNA gene	Chr11:18387351-18403800 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007606	lncRNA gene	Chr11:18274496-18291008 (-)
CBA/J	ENSMUSG00210009354	lncRNA gene	Chr11:18311265-18327709 (-)
DBA/2J	ENSMUSG00185012075	lncRNA gene	Chr11:18415635-18432090 (-)
FVB/NJ	ENSMUSG00205005007	lncRNA gene	Chr11:18382252-18398700 (-)
JF1/MsJ	ENSUMUG00000006500	lncRNA gene	Chr11:18606895-18623416 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190008947	lncRNA gene	Chr11:18458969-18478074 (-)
NZO/HlLtJ	ENSMUSG00225022196	lncRNA gene	Chr11:21492662-21509110 (-)
PWK/PhJ	ENSLUMG00010012313	lncRNA gene	Chr11:18262871-18284459 (-)
SPRET/EiJ	ENSMSPG00010019202	lncRNA gene	Chr11:18527822-18543861 (-)
WSB/EiJ	ENSIUOG00005010161	lncRNA gene	Chr11:18369823-18388142 (-)

Homology

• Gene Tree
  4932414J04Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving 4932414J04Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000078962 (Evidence)
• NCBI Gene
  237694

Representative Sequences			Length	Strain/Species
genomic	237694	NCBI Gene Model | MGI Sequence Detail	16451	C57BL/6J
transcript	NR_028259	RefSeq | MGI Sequence Detail	3061	C57BL/6
polypeptide	Q8C0R4	UniProt | EBI | MGI Sequence Detail	226	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• EC
  2.7.11.1
• InterPro Domains
  IPR000719 Protein kinase domain
  IPR011009 Protein kinase-like domain superfamily

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:104824 Schmitt-John T, et al., Mutation of Vps54 causes motor neuron disease and defective spermiogenesis in the wobbler mouse. Nat Genet. 2005 Nov;37(11):1213-5