9330162012Rik Gene Detail

Summary

• Symbol
  9330162012Rik
• Name
  cDNA RIKEN 9330162012 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3604449
  NCBI Gene: 493800
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:25121384-25123032 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 10.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3604449	lncRNA gene	Chr13:25121384-25125400 (+)
129S1/SvImJ	ENSMUSG00200030863	lncRNA gene	Chr13:22252742-22256759 (+)
A/J	ENSMUSG00195038614	lncRNA gene	Chr13:21402017-21406034 (+)
AKR/J	ENSMUSG00220012999	lncRNA gene	Chr13:21223161-21227178 (+)
BALB/cJ	ENSMUSG00180026019	lncRNA gene	Chr13:21720477-21724494 (+)
C3H/HeJ	ENSMUSG00175033497	lncRNA gene	Chr13:21726743-21730759 (+)
C57BL/6NJ	ENSMUSG00215015323	lncRNA gene	Chr13:21882285-21886301 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013387	unclassified non-coding RNA gene	Chr13:20742823-20746897 (+)
CAST/EiJ	ENSTCUG00005010635	lncRNA gene	Chr13:21902095-21906114 (+)
CBA/J	ENSMUSG00210027100	lncRNA gene	Chr13:21681867-21685883 (+)
DBA/2J	ENSMUSG00185021689	lncRNA gene	Chr13:22503850-22507866 (+)
FVB/NJ	ENSMUSG00205029943	lncRNA gene	Chr13:21522534-21526550 (+)
JF1/MsJ	ENSUMUG00000015943	lncRNA gene	Chr13:22177325-22181341 (+)
LP/J	ENSMUSG00230021896	lncRNA gene	Chr13:31830875-31834891 (+)
NOD/ShiLtJ	ENSMUSG00190036920	lncRNA gene	Chr13:21505270-21509286 (+)
NZO/HlLtJ	ENSMUSG00225046319	lncRNA gene	Chr13:25617189-25621205 (+)
PWK/PhJ	ENSLUMG00010032067	lncRNA gene	Chr13:21040021-21044037 (+)
SPRET/EiJ	ENSMSPG00010027304	lncRNA gene	Chr13:20867639-20871705 (+)
WSB/EiJ	ENSIUOG00005017314	lncRNA gene	Chr13:21030167-21034177 (+)

Homology

• Gene Tree
  9330162012Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving 9330162012Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1

• Ensembl
  ENSMUSG00000086448 (Evidence)
• NCBI Gene
  493800

Representative Sequences			Length	Strain/Species
genomic	493800	NCBI Gene Model | MGI Sequence Detail	1649	C57BL/6J
transcript	NR_102323	RefSeq | MGI Sequence Detail	1468	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 17

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for 9330162012Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118979	Chr13:25121127-25121149 (+)	-246 bp
Tssr118980	Chr13:25121161-25121187 (+)	-210 bp
Tssr118981	Chr13:25121191-25121202 (+)	-187 bp