9930004E17Rik Gene Detail

Summary

• Symbol
  9930004E17Rik
• Name
  RIKEN cDNA 9930004E17 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3603579
  NCBI Gene: 654819
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:26390866-26403508 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  438 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603579	lncRNA gene	Chr14:26390866-26403508 (+)
129S1/SvImJ	ENSMUSG00200015319	lncRNA gene	Chr14:18195475-18196037 (+)
A/J	ENSMUSG00195023031	lncRNA gene	Chr14:19263458-19264020 (+)
AKR/J	ENSMUSG00220027848	lncRNA gene	Chr14:18363000-18363562 (+)
BALB/cJ	ENSMUSG00180040288	lncRNA gene	Chr14:18355316-18355878 (+)
C3H/HeJ	ENSMUSG00175024973	lncRNA gene	Chr14:18422873-18423435 (+)
C57BL/6NJ	ENSMUSG00215034885	lncRNA gene	Chr14:18671218-18671780 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002863	antisense lncRNA gene	Chr14:19034040-19034561 (+)
CAST/EiJ	ENSTCUG00005032826	lncRNA gene	Chr14:18528712-18529274 (+)
CBA/J	ENSMUSG00210027137	lncRNA gene	Chr14:18657708-18658270 (+)
DBA/2J	ENSMUSG00185042306	lncRNA gene	Chr14:22952292-22952854 (+)
FVB/NJ	ENSMUSG00205040245	lncRNA gene	Chr14:18484670-18485232 (+)
JF1/MsJ	ENSUMUG00000046824	lncRNA gene	Chr14:30205238-30205800 (+)
LP/J	ENSMUSG00230040387	lncRNA gene	Chr14:30224450-30225012 (+)
NOD/ShiLtJ	ENSMUSG00190039138	lncRNA gene	Chr14:18668459-18669021 (+)
NZO/HlLtJ	ENSMUSG00225038234	lncRNA gene	Chr14:24554538-24555100 (+)
PWK/PhJ	ENSLUMG00010022290	lncRNA gene	Chr14:6800800-6801362 (+)
SPRET/EiJ	ENSMSPG00010034395	lncRNA gene	Chr14:20289760-20290338 (+)
WSB/EiJ	ENSIUOG00005034800	lncRNA gene	Chr14:18502458-18503020 (+)

Homology

• Gene Tree
  9930004E17Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• UniProt
  3

• Ensembl
  ENSMUSG00000096052 (Evidence)
• NCBI Gene
  654819

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096052	Ensembl Gene Model | MGI Sequence Detail	12643	C57BL/6J
transcript	ENSMUST00000180031	Ensembl | MGI Sequence Detail	1809	Not Applicable
polypeptide	Q3UVX4	UniProt | EBI | MGI Sequence Detail	269	Not Applicable

Protein
Information

• UniProt
  3 Sequences

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for 9930004E17Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124704	Chr14:26391094-26391126 (+)	244 bp
Tssr124705	Chr14:26394331-26394339 (+)	3,469 bp