G530011O06Rikx Gene Detail

Summary

• Symbol
  G530011O06Rikx
• Name
  RIKEN cDNA G530011O06 gene x
• Synonyms
  G530011O06Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:3603513
  NCBI Gene: 654820
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS
• Homologous PAR Feature
  G530011O06Riky

Location &
Maps

• Sequence Map
  ChrX:168758039-168762286 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome XY, 79.33 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  53 from dbSNP Build 142
• Strain Annotations
  21

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603513	lncRNA gene	ChrX:168758039-168762286 (-)
129S1/SvImJ	ENSMUSG00200014205	lncRNA gene	ChrX:145610849-145614726 (-)
129S1/SvImJ	ENSMUSG00200014067	lncRNA gene	ChrX:145519589-145523466 (-)
A/J	ENSMUSG00195016427	lncRNA gene	ChrX:150619986-150623864 (-)
AKR/J	ENSMUSG00220010993	lncRNA gene	ChrX:142510224-142514187 (-)
AKR/J	ENSMUSG00220010955	protein coding gene	ChrX:142510762-142514624 (-)
BALB/cJ	ENSMUSG00180018364	lncRNA gene	ChrX:146006469-146010379 (-)
BALB/cJ	ENSMUSG00180017350	protein coding gene	ChrX:146007691-146013232 (-)
C3H/HeJ	ENSMUSG00175010577	lncRNA gene	ChrX:150552976-150556852 (-)
C57BL/6NJ	ENSMUSG00215019435	lncRNA gene	ChrX:146379033-146382937 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013913	unclassified non-coding RNA gene	ChrX:158002905-158011108 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210027979	protein coding gene	ChrX:147969825-147971867 (-)
CBA/J	ENSMUSG00210029989	lncRNA gene	ChrX:147966584-147970458 (-)
DBA/2J	ENSMUSG00185031103	lncRNA gene	ChrX:162833794-162837666 (-)
FVB/NJ	ENSMUSG00205002866	lncRNA gene	ChrX:146463289-146467167 (-)
JF1/MsJ	ENSUMUG00000010989	lncRNA gene	ChrX:183268451-183271758 (-)
LP/J	ENSMUSG00230027218	lncRNA gene	ChrX:169612097-169615995 (-)
LP/J	ENSMUSG00230025460	protein coding gene	ChrX:169613296-169619676 (-)
NOD/ShiLtJ	ENSMUSG00190022064	lncRNA gene	ChrX:146985194-146989068 (-)
NZO/HlLtJ	ENSMUSG00225038373	protein coding gene	ChrX:172835969-173161911 (-)
PWK/PhJ	ENSLUMG00010001657	lncRNA gene	ChrX:144335219-144339094 (-)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  G530011O06Rikx
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• UniProt
  1

• Ensembl
  ENSMUSG00000072844 (Evidence)
• NCBI Gene
  654820 (also overlaps G530011O06Riky)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072844	Ensembl Gene Model | MGI Sequence Detail	4248	C57BL/6J
transcript	ENSMUST00000154810	Ensembl | MGI Sequence Detail	2753	Not Applicable
polypeptide	Q3UE70	UniProt | EBI | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:7425328

References

• Summaries
  All 14

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for G530011O06Rikx:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164642	ChrX:168762225-168762249 (-)	49 bp
Tssr164736	ChrX:168761970-168761979 (-)	311 bp
Tssr164641	ChrX:168761932-168761948 (-)	346 bp
Tssr5721	ChrX:168761904-168761927 (-)	370 bp
Tssr164640	ChrX:168761852-168761878 (-)	421 bp
Tssr164735	ChrX:168761770-168761781 (-)	510 bp