9530082P21Rik Gene Detail

Summary

• Symbol
  9530082P21Rik
• Name
  RIKEN cDNA 9530082P21 gene
• Synonyms
  E030034P13Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:3603340
  NCBI Gene: 638247
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:23968210-23973039 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 12.03 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  201 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603340	lncRNA gene	Chr17:23962208-23973039 (+)
129S1/SvImJ	ENSMUSG00200038268	lncRNA gene	Chr17:19381007-19391849 (+)
A/J	ENSMUSG00195039023	lncRNA gene	Chr17:20399226-20410068 (+)
AKR/J	ENSMUSG00220026873	lncRNA gene	Chr17:19460617-19471471 (+)
BALB/cJ	ENSMUSG00180019060	lncRNA gene	Chr17:19681819-19692661 (+)
C3H/HeJ	ENSMUSG00175045166	lncRNA gene	Chr17:19467183-19478036 (+)
C57BL/6NJ	ENSMUSG00215043244	lncRNA gene	Chr17:19469949-19480780 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005180	lincRNA gene	Chr17:19571362-19582196 (+)
CAST/EiJ	ENSTCUG00005022921	lncRNA gene	Chr17:20045599-20056437 (+)
CBA/J	ENSMUSG00210041857	lncRNA gene	Chr17:19306033-19316886 (+)
DBA/2J	ENSMUSG00185053253	lncRNA gene	Chr17:21488008-21498850 (+)
FVB/NJ	ENSMUSG00205034650	lncRNA gene	Chr17:19756973-19767818 (+)
JF1/MsJ	ENSUMUG00000057891	lncRNA gene	Chr17:20961742-20972573 (+)
LP/J	ENSMUSG00230055151	lncRNA gene	Chr17:22885912-22896755 (+)
NOD/ShiLtJ	ENSMUSG00190038504	lncRNA gene	Chr17:19385826-19396667 (+)
NZO/HlLtJ	ENSMUSG00225054828	lncRNA gene	Chr17:24808977-24819820 (+)
PWK/PhJ	ENSLUMG00010020823	lncRNA gene	Chr17:18857213-18868051 (+)
SPRET/EiJ	ENSMSPG00010042909	lncRNA gene	Chr17:20212765-20223629 (+)
WSB/EiJ	ENSIUOG00005040473	lncRNA gene	Chr17:20134247-20145096 (+)

Homology

• Gene Tree
  9530082P21Rik
  

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000097006 (Evidence)
• NCBI Gene
  638247

Representative Sequences			Length	Strain/Species
genomic	638247	NCBI Gene Model | MGI Sequence Detail	4830	C57BL/6J
transcript	NR_015472	RefSeq | MGI Sequence Detail	3162	C57BL/6

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 9
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for 9530082P21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142952	Chr17:23968293-23968327 (+)	100 bp
Tssr142953	Chr17:23968334-23968358 (+)	136 bp