G630016G05Rik Gene Detail

Summary

• Symbol
  G630016G05Rik
• Name
  RIKEN cDNA G630016G05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3603178
  NCBI Gene: 108168785
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr2:115897706-115916392 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 58.52 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  381 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3603178	lncRNA gene	Chr2:115894998-115937330 (+)
129S1/SvImJ	ENSMUSG00200049154	lncRNA gene	Chr2:112800686-112819450 (+)
A/J	ENSMUSG00195026139	lncRNA gene	Chr2:112890005-112908737 (+)
AKR/J	ENSMUSG00220044155	lncRNA gene	Chr2:112744132-112762871 (+)
BALB/cJ	ENSMUSG00180044848	lncRNA gene	Chr2:112684541-112703275 (+)
C3H/HeJ	ENSMUSG00175027569	lncRNA gene	Chr2:113114217-113132978 (+)
C57BL/6NJ	ENSMUSG00215031600	lncRNA gene	Chr2:112805218-112823918 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005458	lincRNA gene	Chr2:108957740-108976463 (+)
CAST/EiJ	ENSTCUG00005017077	lncRNA gene	Chr2:112039155-112057996 (+)
CBA/J	ENSMUSG00210007630	lncRNA gene	Chr2:112955307-112974063 (+)
DBA/2J	ENSMUSG00185048185	lncRNA gene	Chr2:112681267-112699999 (+)
FVB/NJ	ENSMUSG00205043916	lncRNA gene	Chr2:111892416-111911148 (+)
JF1/MsJ	ENSUMUG00000043986	lncRNA gene	Chr2:112500608-112519446 (+)
LP/J	ENSMUSG00230023746	lncRNA gene	Chr2:114462716-114481479 (+)
NOD/ShiLtJ	ENSMUSG00190046817	lncRNA gene	Chr2:112878143-112896866 (+)
NZO/HlLtJ	ENSMUSG00225004643	lncRNA gene	Chr2:122369356-122388078 (+)
PWK/PhJ	ENSLUMG00010003633	lncRNA gene	Chr2:112453910-112472792 (+)
SPRET/EiJ	ENSMSPG00010044589	lncRNA gene	Chr2:114722014-114740966 (+)
WSB/EiJ	ENSIUOG00005028921	lncRNA gene	Chr2:112598582-112617335 (+)

Homology

• Gene Tree
  G630016G05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Gene trapped
  4
• Radiation induced
  1
• Genomic Mutations
  2 involving G630016G05Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  106
• RefSeq
  1

• Ensembl
  ENSMUSG00000086308 (Evidence)
• NCBI Gene
  108168785

Representative Sequences			Length	Strain/Species
genomic	108168785	NCBI Gene Model | MGI Sequence Detail	18687	C57BL/6J
transcript	NR_153841	RefSeq | MGI Sequence Detail	796	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for G630016G05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr19467	Chr2:115897694-115897731 (+)	7 bp
Tssr19468	Chr2:115898414-115898456 (+)	729 bp
Tssr19469	Chr2:115904364-115904366 (+)	6,659 bp