Mccc1os Gene Detail

Summary

• Symbol
  Mccc1os
• Name
  methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand
• Synonyms
  A330050B17Rik

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3590669
  NCBI Gene: 654424
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:36054062-36062977 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 17.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  367 from dbSNP Build 142
• Strain Annotations
  28

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3590669	antisense lncRNA gene	Chr3:36053982-36079255 (+)
129S1/SvImJ	ENSMUSG00200006785	lncRNA gene	Chr3:32778642-32809269 (+)
A/J	ENSMUSG00195001375	protein coding gene	Chr3:32706058-32795571 (+)
A/J	ENSMUSG00195001509	lncRNA gene	Chr3:32772944-32798233 (+)
AKR/J	ENSMUSG00220000865	lncRNA gene	Chr3:32805646-32836280 (+)
BALB/cJ	ENSMUSG00180002918	lncRNA gene	Chr3:32907641-32932916 (+)
BALB/cJ	ENSMUSG00180002520	protein coding gene	Chr3:32840595-32930254 (+)
C3H/HeJ	ENSMUSG00175003693	lncRNA gene	Chr3:32803061-32828357 (+)
C3H/HeJ	ENSMUSG00175003166	protein coding gene	Chr3:32736174-32825695 (+)
C57BL/6NJ	ENSMUSG00215001424	protein coding gene	Chr3:33114611-33204277 (+)
C57BL/6NJ	ENSMUSG00215001557	lncRNA gene	Chr3:33181662-33206939 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003349	antisense lncRNA gene	Chr3:30855825-30879864 (+)
CAST/EiJ	ENSTCUG00005001209	lncRNA gene	Chr3:32642323-32667652 (+)
CBA/J	ENSMUSG00210001651	lncRNA gene	Chr3:32851245-32876540 (+)
CBA/J	ENSMUSG00210001336	protein coding gene	Chr3:32784364-32873878 (+)
DBA/2J	ENSMUSG00185001018	protein coding gene	Chr3:32985466-33075124 (+)
DBA/2J	ENSMUSG00185001726	lncRNA gene	Chr3:33052511-33077786 (+)
FVB/NJ	ENSMUSG00205000548	protein coding gene	Chr3:32129831-32227001 (+)
FVB/NJ	ENSMUSG00205000767	lncRNA gene	Chr3:32204022-32229663 (+)
JF1/MsJ	ENSUMUG00000000761	lncRNA gene	Chr3:32598902-32624514 (+)
LP/J	ENSMUSG00230024569	lncRNA gene	Chr3:35021603-35052233 (+)
NOD/ShiLtJ	ENSMUSG00190001165	protein coding gene	Chr3:33029867-33119376 (+)
NOD/ShiLtJ	ENSMUSG00190001990	lncRNA gene	Chr3:33096764-33122038 (+)
NZO/HlLtJ	ENSMUSG00225007291	lncRNA gene	Chr3:37645495-37678488 (+)
NZO/HlLtJ	ENSMUSG00225006200	protein coding gene	Chr3:37578542-37675827 (+)
PWK/PhJ	ENSLUMG00010000721	lncRNA gene	Chr3:32598764-32624228 (+)
SPRET/EiJ	ENSMSPG00010000843	lncRNA gene	Chr3:33017463-33042271 (+)
WSB/EiJ	ENSIUOG00005014235	lncRNA gene	Chr3:33092367-33117698 (+)

Homology

• Gene Tree
  Mccc1os
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Mccc1os
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  44
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000086392 (Evidence)
• NCBI Gene
  654424

Representative Sequences			Length	Strain/Species
genomic	654424	NCBI Gene Model | MGI Sequence Detail	8916	C57BL/6J
transcript	NR_029456	RefSeq | MGI Sequence Detail	4451	C57BL/6
polypeptide	Q8BG57	UniProt | EBI | MGI Sequence Detail	156	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Mccc1os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28858	Chr3:36054566-36054589 (+)	516 bp