B130055M24Rik Gene Detail

Summary

• Symbol
  B130055M24Rik
• Name
  RIKEN cDNA B130055M24 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3590645
  NCBI Gene: 654803
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr7:127047861-127056347 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 69.53 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  290 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3590645	lncRNA gene	Chr7:127047771-127068915 (+)
129S1/SvImJ	ENSMUSG00200026933	lncRNA gene	Chr7:113560792-113572502 (+)
A/J	ENSMUSG00195047426	lncRNA gene	Chr7:118076062-118087594 (+)
AKR/J	ENSMUSG00220028577	lncRNA gene	Chr7:111509829-111521585 (+)
BALB/cJ	ENSMUSG00180013650	lncRNA gene	Chr7:114750664-114762420 (+)
C3H/HeJ	ENSMUSG00175018885	lncRNA gene	Chr7:115477584-115489341 (+)
C57BL/6NJ	ENSMUSG00215036906	lncRNA gene	Chr7:114757491-114769217 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013815	unclassified non-coding RNA gene	Chr7:129497043-129497977 (+)
CAST/EiJ	ENSTCUG00005049173	lncRNA gene	Chr7:118000791-118012525 (+)
CBA/J	ENSMUSG00210023771	lncRNA gene	Chr7:115238574-115250290 (+)
DBA/2J	ENSMUSG00185051194	lncRNA gene	Chr7:119551414-119563134 (+)
FVB/NJ	ENSMUSG00205042710	lncRNA gene	Chr7:115194356-115206085 (+)
JF1/MsJ	ENSUMUG00000048255	lncRNA gene	Chr7:124615727-124627152 (+)
LP/J	ENSMUSG00230053357	lncRNA gene	Chr7:125660732-125672446 (+)
NOD/ShiLtJ	ENSMUSG00190019349	lncRNA gene	Chr7:115398161-115409687 (+)
NZO/HlLtJ	ENSMUSG00225012738	lncRNA gene	Chr7:123890868-123902630 (+)
PWK/PhJ	ENSLUMG00010043153	lncRNA gene	Chr7:113753077-113764493 (+)
SPRET/EiJ	ENSMSPG00010014289	lncRNA gene	Chr7:115009919-115020977 (+)
WSB/EiJ	ENSIUOG00005034964	lncRNA gene	Chr7:116098795-116110522 (+)

Homology

• Gene Tree
  B130055M24Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  10 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000086502 (Evidence)
• NCBI Gene
  654803

Representative Sequences			Length	Strain/Species
genomic	654803	NCBI Gene Model | MGI Sequence Detail	8487	C57BL/6J
transcript	NR_183252	RefSeq | MGI Sequence Detail	1079	C57BL/6
polypeptide	Q8BQF9	UniProt | EBI | MGI Sequence Detail	142	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for B130055M24Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr69207	Chr7:127047798-127047816 (+)	-54 bp
Tssr69208	Chr7:127047828-127047879 (+)	-7 bp