4930558J22Rik Gene Detail

Summary

• Symbol
  4930558J22Rik
• Name
  RIKEN cDNA 4930558J22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:3590517
  NCBI Gene: 218102
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:23939805-23941603 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 9.91 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3590517	lncRNA gene	Chr13:23939805-23941603 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015251	unclassified non-coding RNA gene	Chr13:21200113-21201537 (-)
A/J	MGP_AJ_G0015225	unclassified non-coding RNA gene	Chr13:20808768-20810786 (-)
AKR/J	MGP_AKRJ_G0015188	unclassified non-coding RNA gene	Chr13:21062883-21064307 (-)
BALB/cJ	MGP_BALBcJ_G0015187	unclassified non-coding RNA gene	Chr13:20803311-20804735 (-)
C3H/HeJ	MGP_C3HHeJ_G0015011	unclassified non-coding RNA gene	Chr13:21134894-21136318 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015644	unclassified non-coding RNA gene	Chr13:21980229-21981646 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013386	unclassified non-coding RNA gene	Chr13:19583973-19585366 (-)
CAST/EiJ	MGP_CASTEiJ_G0014564	unclassified non-coding RNA gene	Chr13:20817765-20819178 (-)
CBA/J	MGP_CBAJ_G0014990	unclassified non-coding RNA gene	Chr13:22832251-22835870 (-)
DBA/2J	MGP_DBA2J_G0015083	unclassified non-coding RNA gene	Chr13:20337440-20338864 (-)
FVB/NJ	MGP_FVBNJ_G0015094	unclassified non-coding RNA gene	Chr13:19988014-19989438 (-)
LP/J	MGP_LPJ_G0015164	unclassified non-coding RNA gene	Chr13:21508306-21509719 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015121	unclassified non-coding RNA gene	Chr13:23128260-23131527 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015683	unclassified non-coding RNA gene	Chr13:20915689-20917113 (-)
PWK/PhJ	MGP_PWKPhJ_G0014356	unclassified non-coding RNA gene	Chr13:20369264-20370234 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014143	unclassified non-coding RNA gene	Chr13:19797923-19798854 (-)
WSB/EiJ	MGP_WSBEiJ_G0014667	unclassified non-coding RNA gene	Chr13:21052908-21054325 (-)

Homology

• Gene Tree
  4930558J22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  2
• Radiation induced
  1
• Genomic Mutations
  2 involving 4930558J22Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• UniProt
  1

• Ensembl
  ENSMUSG00000075029 (Evidence)
• NCBI Gene
  218102

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075029	Ensembl Gene Model | MGI Sequence Detail	1799	C57BL/6J
transcript	ENSMUST00000139822	Ensembl | MGI Sequence Detail	1480	Not Applicable
polypeptide	Q3V066	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 19

  Phenotypes 10
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

TSS for 4930558J22Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121748	Chr13:23941586-23941612 (-)	4 bp